Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03987 ATGGCTTCTTCTCTCTATCTCTCCACACCATCTCTCTCACGCCCAAGGGTATGCAAAAATTTCAAATTGCTCAATGGGTTGAGCAGTATAAATTCATCTATGATACATGTGCGTGGCTCAGATTTGCCGTTTGTTCGGCTGAGCTCTAAATTCCCTTCATGTCTCATTGCTGTAAGTAGAATTAAAGCTGCATTGACCTCTGGAGGGGGAGACCTAAAAAACGAAGATCTTGTTGGTGTTGAATCGGCACAACCTAATGCAGTAGTGCTTGGAACATTGGGAGCAGACACGGCTCTAACAGGAAGTGGTTTTGCTGATGATAACGATGACTTTGATTCGGACAGTCCAACAAAAGGTTTTGCTTCCATACCAGAGGCCATTGAAGACATTCGGAACGGAAAGATGGTAGTTGTTGTAGATGATGAGGATAGAGAAAATGAAGGGGACCTAATAATGGCAGCACAGTTGGCAACACCTGAGGCTATGGCTTTTATTGTGAAGCATGGAACTGGCATTGTTTGTATAAGCATGAAAGAGGAAGATCTGGAGAGATTAGAGCTTCCTTTGATGGTCAACAGTCGGGATAATGATGAGAAACTCCGTACAGCATTCACTGTGACAGTGGATGCCAAATATGGTACGACCACAGGGGTGTCCGCTCAGGATAGGGCAACAACAGTTTTGGCCCTTGCATCCAAAGATTCAAAACCAAGTGATTTCAACCGCCCAGGCCATATTTTCCCACTAAAATACAGGGAAGGTGGTATCTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTGGCAGTACTTGCTGGTTTGGATCCTGTGGCAGTTCTGTGTGAGGTTGTGGATGATGATGGTTCCATGGCTAGATTACCTAAGCTTCGCCAGTTTGCAGAGCGTGAAAATTTGAAAATTATATCTATTGCTGACTTGATAAGGTATAGAAGGAAGAGAGATAAACTAGTGGAACGTGCTGGTGCTGCACTAATACCAACAATGTGGGGGCCATTTACAGCTAACTGTTACAGGTCACTTTTAGACGGGATGGAGCATATTGCGATGGTAAAGGGTGACATTGGGGATGGTTGTGATGTTCTTGTGAGGGTACACTCAGAGTGTCTCACAGGAGACATATTTGGATCTGCCAGGTGTGACTGCGGAAATCAGCTTGCTCTTGCAATGCAACAGATTGAGGCGGCTGGTAGAGGTGTGTTAGTATATCTTCGTGGACATGAAGGAAGGGGTATTGGATTGGGCCACAAGCTTCGTGCTTATAACCTACAGGATGAGGGAAGGGATACTGTAGAAGCAAATGAGGAGTTGGGATTGCCTGTTGACTCAAGAGAGTATGGAATTGGTGCACAGATATTGAGGGACTTGGGTGTGCGTTCTATGAAGCTGATGACAAACAATCCTGCAAAATATGTTGGGCTCAAAGGTTACGGTTTGTCAATTTCCGGTAGGATCCCATTGTTATCACTTATCACAAACGAAAACAGGAGATACTTGGAAACCAAACGTGTGAAAATGGGACACATGTATGGCTTGGATTTTAACAGCAAATTGAATGGTAATGCTAGTAGTGTTGATGATTCCAATGCTGCTCCTGACACATAA 1626 0.4434 MASSLYLSTPSLSRPRVCKNFKLLNGLSSINSSMIHVRGSDLPFVRLSSKFPSCLIAVSRIKAALTSGGGDLKNEDLVGVESAQPNAVVLGTLGADTALTGSGFADDNDDFDSDSPTKGFASIPEAIEDIRNGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCISMKEEDLERLELPLMVNSRDNDEKLRTAFTVTVDAKYGTTTGVSAQDRATTVLALASKDSKPSDFNRPGHIFPLKYREGGILKRAGHTEASVDLAVLAGLDPVAVLCEVVDDDGSMARLPKLRQFAERENLKIISIADLIRYRRKRDKLVERAGAALIPTMWGPFTANCYRSLLDGMEHIAMVKGDIGDGCDVLVRVHSECLTGDIFGSARCDCGNQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLSISGRIPLLSLITNENRRYLETKRVKMGHMYGLDFNSKLNGNASSVDDSNAAPDT 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03987 541 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 119 515 IPR016299 GO:0009231
Trre7g03987 541 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 125 317 IPR000422 GO:0008686|GO:0009231
Trre7g03987 541 PANTHER GTP CYCLOHYDROLASE II-RELATED 118 518 - -
Trre7g03987 541 Hamap GTP cyclohydrolase-2 [ribA]. 323 519 IPR000926 GO:0003935|GO:0009231
Trre7g03987 541 Pfam GTP cyclohydrolase II 330 493 IPR032677 -
Trre7g03987 541 SUPERFAMILY RibA-like 323 494 IPR036144 -
Trre7g03987 541 SUPERFAMILY YrdC/RibB 119 321 IPR017945 -
Trre7g03987 541 FunFam Riboflavin biosynthesis protein RibBA 325 496 - -
Trre7g03987 541 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 118 322 IPR000422 GO:0008686|GO:0009231
Trre7g03987 541 Gene3D DHBP synthase 107 324 - -
Trre7g03987 541 Gene3D GTP cyclohydrolase II 325 495 IPR036144 -
Trre7g03987 541 NCBIfam GTP cyclohydrolase II 330 516 IPR000926 GO:0003935|GO:0009231
Trre7g03987 541 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 111 324 - -
Trre7g03987 541 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 121 318 IPR000422 GO:0008686|GO:0009231
Trre7g03987 541 CDD GTP_cyclohydro2 324 516 IPR000926 GO:0003935|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03987 Trre-Chr7 48068623 48074190 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03987 K14652 - gmx:100791378 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03987 7 48068623 48074190 Trre7g03987 7 48068623 48074190 ECH
Trre7g03987 7 48068623 48074190 Trre3g00232 3 1536078 1540136 PCT