Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00389 ATGTCAAAACTGCTAATTGTGCCTTTTTTATGCTCTTCTGTTGAGTGCAGTGTAATCAGACAATTGAAATTGTTCACTGGGTTGCACAAGTTCTCACTCAATGGACATGGGTCGGATCTGGCCCTTGTCCAACTCAACTCCAGAGTCTCCAGTGCTACTTGTAGAATTAAAGCTACATTGACCTCTGGAGGAATGAGATCTTATAATGGCGTGGGAACTGAGCTGCAACGTGATGTCGTAGCATTTGGAATTCTGGGAACAGACACAGCAGTGCCAGCAGGCAGTGGTTTTTCTGATGGTGATGATGAGTATGACTTCGACAGTCCAACAGGAGGTTTCGCTTCCATACAGGAGGCCATCGAAGATATTAGGAATGGAAAGATGGTAGTGGTCGTAGATGACGAGGATAGGGAAAATGAGGGAGACTTGATAATGTCTGCGGAGTTGGCTACACCTGAGGCCATGGCTTTCATTGTGAAGCATGGAACTGGGATAGTTTGCATAAGCATGAAGGAGGAAGATTTGGAGAGATTGGACCTTCCTTTGATGGTAAACAGTCAGTATAATGATGAGAAACTTCGCACAGCATTCACTGTGACAGTGGATGCTAAACATGGTACTACCACAGGAGTGTCAGCTCGTGATAGGGCTACAACAGTCTTGGCCCTTGCATCCAAAGATTCAAAACCAAGTGATTTCAACCGCCCAGGCCATATTTTCCCACTAATGTACAGGGAGGGTGGTGTGCTGAAGAGAGCTGGACATACAGAAGCTTCGGTTGATCTTGCCGTACTTGCTGGTTTGAATCCTGTGGCAGTTCTGTGTGAGATTGTGGATGACGATGGTTCAATGGCTAGATTACCTAAGCTCCGCCAGTTTGCAGAGCGTGAAAATTTAAAAATTGTATCTATTGCTGACTTAATAAGATTTAGAAGGAAGAGAGATAAACTAGTAGAGCCGGCTGGTTCTGCAGTAATACCAACAATGTGGGGGCCATTTACAGCAAACTGCTATAGGTCACTTTTAGATGGGATTGAGCATATTACGATGGTTAAGGGTGACATTGGGGATGGACATGATGTACTTGTGAGGGTACATTCGGAATGTCTCACGGGAGACATATTTGGATCTGCCAGATGTGACTGTGGAAATCAGCTTTCTCTTGCAATGCAACAAATTGAGGCTGCTGGTAGAGGTGTATTGGTCTATCTTCGTGGACATGAAGGAAGGGGCATTGGGTTGGGCCACAAACTTCGTGCCTATAACCTACAGGATGATGGACGGGACACTGTAGAAGCTAATGAGGAGTTGGGATTGCCTGTTGACTCAAGGGAGTATGGAATTGGTGCACAGATTTTGAGGGACTTGGGTGTTCGTTCTATGAAGCTGATGACAAACAATCCAGCAAAATATGTGGGGCTCAAAGGTTATGGTTTGACAATTTCCGGTAGGATACCATTGTTATCTCTTATCACAAAAGAGAACAAGAGATACTTGGAGACCAAACGTGTGAAAATGGGTCACGTATATGGCTCGGAATTTAATAGCAAATTGAAGTATCCTGACAGTGGCAATGGTAAAGTCAACAGTGGTGATGATTCTAATGCTGCTCCTGGCTTATAA 1623 0.4461 MSKLLIVPFLCSSVECSVIRQLKLFTGLHKFSLNGHGSDLALVQLNSRVSSATCRIKATLTSGGMRSYNGVGTELQRDVVAFGILGTDTAVPAGSGFSDGDDEYDFDSPTGGFASIQEAIEDIRNGKMVVVVDDEDRENEGDLIMSAELATPEAMAFIVKHGTGIVCISMKEEDLERLDLPLMVNSQYNDEKLRTAFTVTVDAKHGTTTGVSARDRATTVLALASKDSKPSDFNRPGHIFPLMYREGGVLKRAGHTEASVDLAVLAGLNPVAVLCEIVDDDGSMARLPKLRQFAERENLKIVSIADLIRFRRKRDKLVEPAGSAVIPTMWGPFTANCYRSLLDGIEHITMVKGDIGDGHDVLVRVHSECLTGDIFGSARCDCGNQLSLAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLTISGRIPLLSLITKENKRYLETKRVKMGHVYGSEFNSKLKYPDSGNGKVNSGDDSNAAPGL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00389 540 Hamap GTP cyclohydrolase-2 [ribA]. 316 512 IPR000926 GO:0003935|GO:0009231
Spst3g00389 540 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 112 508 IPR016299 GO:0009231
Spst3g00389 540 CDD GTP_cyclohydro2 317 508 IPR000926 GO:0003935|GO:0009231
Spst3g00389 540 PANTHER GTP CYCLOHYDROLASE II-RELATED 112 512 - -
Spst3g00389 540 Gene3D DHBP synthase 104 317 - -
Spst3g00389 540 FunFam Riboflavin biosynthesis protein RibBA 318 489 - -
Spst3g00389 540 MobiDBLite consensus disorder prediction 520 540 - -
Spst3g00389 540 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 104 317 - -
Spst3g00389 540 SUPERFAMILY YrdC/RibB 113 314 IPR017945 -
Spst3g00389 540 Gene3D GTP cyclohydrolase II 318 488 IPR036144 -
Spst3g00389 540 SUPERFAMILY RibA-like 316 487 IPR036144 -
Spst3g00389 540 Pfam GTP cyclohydrolase II 323 486 IPR032677 -
Spst3g00389 540 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 117 309 IPR000422 GO:0008686|GO:0009231
Spst3g00389 540 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 113 311 IPR000422 GO:0008686|GO:0009231
Spst3g00389 540 NCBIfam GTP cyclohydrolase II 323 509 IPR000926 GO:0003935|GO:0009231
Spst3g00389 540 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 111 315 IPR000422 GO:0008686|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00389 Spst-Chr3 6800228 6804031 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00389 K14652 - gmx:100791686 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00389 3 6800228 6804031 Spst3g00389 3 6800228 6804031 ECH