Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1143 ATGCAGCAGGCGTGGGATACGCAAAGTCACCTTTGCCATCTCATCTTCTGTGCCAATTATTGGGCCGTCACATTGCCAGGTCACCCGCGGGCGGCAGCTGCCCCCATTACTCCAGACGTTTCCTCGTCCTTTCTCAGGTTCCCTTCTTCCATAAATTCCCTTCCTCACATCCATCGCATTGTCAATTTTCGGCGATTCGCAGCAAATAAAAGACCGCCCATTTTCCTTTCTGAACATTCAATTCATTCGTGTTTGAGTCCCACGACAATGGCTTCCATCAACGCTTCTTGCCCAACAGCAGCTATTTCCCGTTTACGGGCATGCAAAAACTTCAAATTGTTTAATGGACTGCACGGTGTGAATCCCTCTTTGTCAAATTGGTATACATCTGATTTGGCTTTGATTCGGTTGGGTAGCAAATCATCGTTCACTATCAAGGGTGATGGTAGAACTAGAGCTACATTGATATCTGGAGAAGGTGGCCTCCTATCATACTCCAATGGCAATAATGTTGCTGCAATCACCAAGGACCAATCTGTTGGAATTGAGATACAGCCTGATGCAATAGCATTTGGAACGCTTGAAGCAGATACTGCTCCCGCAACTAATGGATTTCCCATTGATAATGATGAATTTGATCTGGATCGTCCCTCAGAAGGTTTTTCTTCCATTCCAGAGGCCATTGAGGACATTCGTCAAGGAAAGATAGTGGTGGTTGTGGATGATGAAGATAGAGAAAATGAAGGGGACCTAATAATGGCAGCTTCACTGGCAACACCTGAAGCTATGGCATTTATTGTGAAGCACGGGACTGGAATTGTTTGTGTGAGCATGAAAGGAGAAGATTTGGAGAGGTTGGAAATTCCTTTGATGGTAACCCAAAAGGATAATGATGAGAAACTTTCTACTGCATTCACAGTGTCAGTGGATGCAAAGCATGGTACAACCACTGGGGTTTCAGCTCGTGATAGGGCAACAACAATATTGGCTCTTGCATCCAGAGATTCAAAGCCTGAAGATTTCAATCGCCCAGGGCATATTTTTCCGTTGAAGTACAGGGAGGGTGGTGTTCTGAAAAGAGCTGGACATACAGAAGCCTCTGTTGACCTTGCTATGCTAGCTGGCTTGGATCCTGTTGCAGTTTTATGTGAGGTTGTGGATGATGATGGTTCCATGGCGAGATTACCAAAGCTTCGCCAATTTGCAGAGAGAGAGAACTTAAAAATCATATCAATTGCTGATTTAATCAGATATAGGCGGAAGAGAGATAAATTAGTGGATCGTTCTGCTGGGGCAAGGATACCTACAATGTGGGGGCCATTCACAGCATACTGCTATCGGTCCATCTTAGATGGGATAGAACATATTGCTATGGTTAAGGGTGAGATTGGTGATGGGCAAGATATTCTTGTGAGAGTACACTCGGAATGCCTCACAGGAGATATATTTGGGTCTGCTAGATGCGATTGTGGAAATCAGCTGGCACTTGCAATGCAACAGATTGAGAAAGCAGGGAAGGGTGTATTGGTGTACCTCCGTGGGCATGAAGGAAGGGGCATTGGTTTGGGACACAAGCTTCATGCTTATAACCTGCAGGATGATGGACGTGATACTGTGGAAGCCAATGAAGAGCTGGGATTGCCTGTTGATTCAAGAGAATACGGCATTGGTGCCCAGATGCTAAGAGATCTGGGTGTTCGAACCATGAAGCTTATGACAAACAACCCTGCAAAGTACATTGGGCTCAAGGGCTATGGTTTGGCAGTTTCTGGCAGAGTCCCACTTCTAACTCCCATTACAAAGGAGAACGGTAGATATTTGGAGACAAAACGCTCTAAAATGGGACATGTCTATGGCTTAGAATTCAATGGTCATCTCACCAATCTTATCAGTGGGAATGGAAAACAGAGCATCAACACCCAACCTGATCCAGTCTCTGACTCGTAA 1947 0.453 MQQAWDTQSHLCHLIFCANYWAVTLPGHPRAAAAPITPDVSSSFLRFPSSINSLPHIHRIVNFRRFAANKRPPIFLSEHSIHSCLSPTTMASINASCPTAAISRLRACKNFKLFNGLHGVNPSLSNWYTSDLALIRLGSKSSFTIKGDGRTRATLISGEGGLLSYSNGNNVAAITKDQSVGIEIQPDAIAFGTLEADTAPATNGFPIDNDEFDLDRPSEGFSSIPEAIEDIRQGKIVVVVDDEDRENEGDLIMAASLATPEAMAFIVKHGTGIVCVSMKGEDLERLEIPLMVTQKDNDEKLSTAFTVSVDAKHGTTTGVSARDRATTILALASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAMLAGLDPVAVLCEVVDDDGSMARLPKLRQFAERENLKIISIADLIRYRRKRDKLVDRSAGARIPTMWGPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMQQIEKAGKGVLVYLRGHEGRGIGLGHKLHAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPAKYIGLKGYGLAVSGRVPLLTPITKENGRYLETKRSKMGHVYGLEFNGHLTNLISGNGKQSINTQPDPVSDS* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1143 648 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 220 616 IPR016299 GO:0009231
Vvi3g1143 648 FunFam Riboflavin biosynthesis protein RibBA 426 597 - -
Vvi3g1143 648 SUPERFAMILY YrdC/RibB 220 422 IPR017945 -
Vvi3g1143 648 Pfam GTP cyclohydrolase II 431 594 IPR032677 -
Vvi3g1143 648 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 212 425 - -
Vvi3g1143 648 PANTHER GTP CYCLOHYDROLASE II-RELATED 219 619 - -
Vvi3g1143 648 Hamap GTP cyclohydrolase-2 [ribA]. 424 620 IPR000926 GO:0003935|GO:0009231
Vvi3g1143 648 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 222 419 IPR000422 GO:0008686|GO:0009231
Vvi3g1143 648 SUPERFAMILY RibA-like 424 596 IPR036144 -
Vvi3g1143 648 Gene3D DHBP synthase 211 425 - -
Vvi3g1143 648 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 219 423 IPR000422 GO:0008686|GO:0009231
Vvi3g1143 648 CDD GTP_cyclohydro2 425 616 IPR000926 GO:0003935|GO:0009231
Vvi3g1143 648 Gene3D GTP cyclohydrolase II 426 597 IPR036144 -
Vvi3g1143 648 NCBIfam GTP cyclohydrolase II 428 617 IPR000926 GO:0003935|GO:0009231
Vvi3g1143 648 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 226 418 IPR000422 GO:0008686|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1143 Vvi-Chr3 15420521 15426698 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1143 K14652 - vvi:100248717 1105.51