Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01723 ATGGCTTCTTCTATCAGTCTCTCCACTCCTTTCTACCGCCCTAGCGTATGCAAACAATTGAAATTGTTTACTGGGTTGCACAAGTTCTCTCTCAATGGACCTGGGTCGGATTTGTCCTTTCTCCAACTCAATGCCAGTGTCTCCAGTGCTACCTTTAGAATTAAAGCTACATTGACCTCTGGACGAGGAGTCTGGGTGTCTTATCCAAACAGCAATGGTGTGGGAACTGAGGGGCAACGTGATGTCGCAGCATTTGGAACTCCGGGAATAGACACAGCAGTGCCAGCAGGCAGTGGTTTTTCTGATGATGATGATGACGAGTATGATTTCGACACTCCAACAGAAGGTTTTGCTTCCGTTCCGGAGGCCATTGAAGACGTTAGGAATGGAAAGATGGTTGTGGTTGTCGATGACGAGGATAGGGAAAATGAAGGAGACGTGATAATGGCTGCGGAGTTGGTTACACCTGAGGCCATGGCTTTTATTGTGAAGCATGGAACTGGGATAGTTTGTATAAGCATGAAGGAGGAAGATTTGGAGAGATTGGAGCTTCCTTTGATGGTAAACAGTCAGTATAATGATGAGAAACTTCGCACAGCGTTCACTGTAACAGTGGATGCTAAACATGGTACTACCACAGGGGTGTCAGCTCGCGATAGAGCTACGACAGTCTTGGCCCTTGCATCCAAAGATTCAAAACCAAGTGATTTCAACCGCCCAGGCCATATTTTCCCACTAATGTACAGGGAGGGTGGTGTGCTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGCCATACTTGCTGGTCTGAATCCTGCAGCAGTTCTGTGTGAGATTGTGGATGATGATGGTTCAATGGCTAGATTACCTAAGCTTCGCCAGTTTGCAGAGCGTGAGAATTTAAAAATTGTATCTATTGCTGACTTAATAAGGTATAGAAGGAAGAGAGATAAACTAGTAGAGCCTGCTGGTTCTGCAGTAATACCAACAATGTGGGGGCCATTTACAGCTAACTGCTATAGGTCGCTTTTAGATGGCATTGAGCATATTACAATGGTTAAGGGTGACATTGGTGATGGACATGATGTACTTGTGAGAGTACACTCAGAGTGTCTCACAGGAGACATATTTGGATCTGCCAGATGTGACTGTGGACATCAGCTTTCGATTGCAATGCAACAGATTGAGACTGCTGGTAGAGGTGTATTGGTCTATCTTCGTGGACATGAAGGAAGGGGCATTGGGTTGGGCCACAAACTTCGTGCCTATAACCTACAGGATGATGGACGGGACACTGTAGAGGCTAATGAGGAGTTGGGATTGCCTGTTGACTCAAGGGAGTATGGAATTGGTGCACAGATTTTGAGAGACTTGGGTGTTCGTTCTATGAAGCTAATGACAAATAATCCAGCAAAGTATGTGGGACTCAAAGGTTATGGTTTGACAATTTCCGGTAGGATACCATTGTTATCACTTATCACAAAAGAGAACAAGAGATACTTAGAGACCAAACGTGCGAAAATGGGTCATGTATATGGCTCAGAATTTAACAGCATATTGAACAATCCAGACAGTGGCAATGGTAAAGCCGGCAGTGGTGATGATTCTAATGCTGCTCCTGGCTTATAA 1635 0.4502 MASSISLSTPFYRPSVCKQLKLFTGLHKFSLNGPGSDLSFLQLNASVSSATFRIKATLTSGRGVWVSYPNSNGVGTEGQRDVAAFGTPGIDTAVPAGSGFSDDDDDEYDFDTPTEGFASVPEAIEDVRNGKMVVVVDDEDRENEGDVIMAAELVTPEAMAFIVKHGTGIVCISMKEEDLERLELPLMVNSQYNDEKLRTAFTVTVDAKHGTTTGVSARDRATTVLALASKDSKPSDFNRPGHIFPLMYREGGVLKRAGHTEASVDLAILAGLNPAAVLCEIVDDDGSMARLPKLRQFAERENLKIVSIADLIRYRRKRDKLVEPAGSAVIPTMWGPFTANCYRSLLDGIEHITMVKGDIGDGHDVLVRVHSECLTGDIFGSARCDCGHQLSIAMQQIETAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLTISGRIPLLSLITKENKRYLETKRAKMGHVYGSEFNSILNNPDSGNGKAGSGDDSNAAPGL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01723 544 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 122 314 IPR000422 GO:0008686|GO:0009231
Viun3g01723 544 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 116 512 IPR016299 GO:0009231
Viun3g01723 544 Gene3D GTP cyclohydrolase II 322 492 IPR036144 -
Viun3g01723 544 PANTHER GTP CYCLOHYDROLASE II-RELATED 115 516 - -
Viun3g01723 544 CDD GTP_cyclohydro2 321 512 IPR000926 GO:0003935|GO:0009231
Viun3g01723 544 SUPERFAMILY RibA-like 320 491 IPR036144 -
Viun3g01723 544 NCBIfam GTP cyclohydrolase II 327 513 IPR000926 GO:0003935|GO:0009231
Viun3g01723 544 Pfam GTP cyclohydrolase II 327 490 IPR032677 -
Viun3g01723 544 FunFam Riboflavin biosynthesis protein RibBA 322 493 - -
Viun3g01723 544 Gene3D DHBP synthase 106 321 - -
Viun3g01723 544 MobiDBLite consensus disorder prediction 525 544 - -
Viun3g01723 544 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 118 315 IPR000422 GO:0008686|GO:0009231
Viun3g01723 544 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 115 319 IPR000422 GO:0008686|GO:0009231
Viun3g01723 544 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 108 321 - -
Viun3g01723 544 Hamap GTP cyclohydrolase-2 [ribA]. 320 516 IPR000926 GO:0003935|GO:0009231
Viun3g01723 544 SUPERFAMILY YrdC/RibB 116 318 IPR017945 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01723 Viun-Chr3 12443661 12448644 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01723 K14652 - gmx:100791378 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01723 3 12443661 12448644 Viun3g01723 3 12443661 12448644 ECH
Viun3g01723 3 12443661 12448644 Viun6g03044 6 33075254 33079306 PCT