Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10746 ATGGCTGCTATATTCAATCTCGCTTCTTCTTCTTCTTCTTCACCTACCCGGTTATCCAACCACTTCAAATTTTTCAATGATTTACCTCCTGCCAGACTCAATTACAAATTTGCTTCAACTCATAATGCTGCTTTGGTATCTGGAGGGGGTGACCTGCTTTCTTATCCAAAAAATAGCAATGATGTTGTCATAGGTAAAGATCTGGTTGTTGTCGATGAGTCCATAACAGACATTTCTTTCCCGCCTGACAACAATGAATTTGATTTGGAAAGTCCCGCACAGGGTTTCGCTTCTATCCCTGAGGCCATTGAAGACATTCGCCGCGGAAAGATGGTAGTTGTTGTAGATGATGAAGATAGAGAAAATGAAGGAGACTTGATAATGGCAGCACAGTTGGCAACACCTGAAGCTATGGCTTTTATAGTGAAGCATGGAACTGGCATAGTTTGTGTAAGCATGAAAGAGGAAGACCTTGATAGATTGGAACTTCCTTTGATGGTGGAAAGTAAAGCTAATGCGGAAAAACTTTGTACCGCATTCACTGTGACAGTGGATGCTAAACATGGTACCACCACAGGGGTGTCAGCTCATGATAGGGCAACTACTGTCTTGGCACTTGCATCTAGAGATTCGACTCCGACTGATTTCAACCGCCCAGGCCATATTTTCCCACTAAAATACAGAGATGGTGGTGTCTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTACCGTACTTGCTGGTTTGGATCCGGTGTCAGTTCTGTGTGAGATTGTAGATGATGATGGTTCCATGGCCAGATTGCCTAAGCTTCGCCAATTTGCCAAGCGTGAGAATTTGAAAATTGTATCTATTGCCGACTTGATAAGGTATAGAAGAAAGAGAGATAAATTAGTAGAACGCTCATCTGCTGCAAGAATACCTACAATGTGGGGGCCATTCACATCATACTGTTATAAATCTCTGTTAGATGGGATTGAGCATATTGCAATGGTTAAGGGTGACATTGGAGATGGAGAAGATGTTCTTGTTAGGGTACACTCGGAGTGTCTAACTGGAGACATATTTGGATCTGCCAGATGTGACTGTGGAAATCAGCTTGCACTTGCAATGGAACAGATTGAGGCTGCCGGAAGAGGTGTCCTTGTATATCTACGCGGACATGAAGGTAGGGGTATTGGATTGGGCCACAAGCTCCGTGCATATAACCTACAGGATAATGGACGAGATACTGTAGAAGCCAACGAGGAGTTGGGGTTGCCTGTTGACTCTAGGGAGTACGGCATTGGTGCACAGATGCTGAGGGATCTAGGTGTTCAATCTATGAAGTTGATGACTAACAATCCATCAAAATATATTGGTCTCAAAGGTTATGGTTTAACTGTTTCTGGTAGGATCCCATTGTTAACTCTTATCACTTCAGAGAACAAGAGATATTTGGAGACAAAACGTGTAAAAATGGGCCACATTTATGGCACCGAACATAACAGTGGCAATGTTAAAACCAATAGTGTTGAAGATTCAAATTCAAATGGTGTTATTGGCCTTTGA 1557 0.4271 MAAIFNLASSSSSSPTRLSNHFKFFNDLPPARLNYKFASTHNAALVSGGGDLLSYPKNSNDVVIGKDLVVVDESITDISFPPDNNEFDLESPAQGFASIPEAIEDIRRGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKEEDLDRLELPLMVESKANAEKLCTAFTVTVDAKHGTTTGVSAHDRATTVLALASRDSTPTDFNRPGHIFPLKYRDGGVLKRAGHTEASVDLTVLAGLDPVSVLCEIVDDDGSMARLPKLRQFAKRENLKIVSIADLIRYRRKRDKLVERSSAARIPTMWGPFTSYCYKSLLDGIEHIAMVKGDIGDGEDVLVRVHSECLTGDIFGSARCDCGNQLALAMEQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDNGRDTVEANEELGLPVDSREYGIGAQMLRDLGVQSMKLMTNNPSKYIGLKGYGLTVSGRIPLLTLITSENKRYLETKRVKMGHIYGTEHNSGNVKTNSVEDSNSNGVIGL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10746 518 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 87 300 - -
Vifa1g10746 518 Gene3D GTP cyclohydrolase II 301 472 IPR036144 -
Vifa1g10746 518 FunFam Riboflavin biosynthesis protein RibBA 301 472 - -
Vifa1g10746 518 PANTHER GTP CYCLOHYDROLASE II-RELATED 94 496 - -
Vifa1g10746 518 Pfam GTP cyclohydrolase II 305 469 IPR032677 -
Vifa1g10746 518 SUPERFAMILY YrdC/RibB 95 297 IPR017945 -
Vifa1g10746 518 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 101 293 IPR000422 GO:0008686|GO:0009231
Vifa1g10746 518 Hamap GTP cyclohydrolase-2 [ribA]. 299 495 IPR000926 GO:0003935|GO:0009231
Vifa1g10746 518 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 97 294 IPR000422 GO:0008686|GO:0009231
Vifa1g10746 518 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 94 298 IPR000422 GO:0008686|GO:0009231
Vifa1g10746 518 Gene3D DHBP synthase 85 300 - -
Vifa1g10746 518 NCBIfam GTP cyclohydrolase II 303 492 IPR000926 GO:0003935|GO:0009231
Vifa1g10746 518 CDD GTP_cyclohydro2 300 492 IPR000926 GO:0003935|GO:0009231
Vifa1g10746 518 SUPERFAMILY RibA-like 299 470 IPR036144 -
Vifa1g10746 518 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 95 491 IPR016299 GO:0009231
Vifa1g10746 518 MobiDBLite consensus disorder prediction 497 518 - -
Vifa1g10746 518 MobiDBLite consensus disorder prediction 494 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10746 Vifa-Chr1 1807994332 1807997473 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10746 K14652 - gmx:100782332 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10746 1 1807994332 1807997473 Vifa1g10746 1 1807994332 1807997473 ECH
Vifa1g10746 1 1807994332 1807997473 Vifa1g10746 1 1807994332 1807997473 PCT