Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05004 ATGGCTTCTTCTCTCAATCTCTCCACACCTTCTCTCTCGCGTCCACGGGCATGCAAAAATTTCAAATTGTTCAATCAGTTGAGCAGTATAAATTCATCTAAGCTACACATGCGTGGCTCAGATTTGGCGTTTGTTCGGCTAAGCTCTAAATTCTCTTCATGTCTCAATGCTGTAAGTAGAATTAAAGCTGCATTGACGTCTGGAGGAGGAGACTTAAAAGACGAAGATATGGTTGGTGTGGAATCGGCACAACCTGATCCAGTAGCACTTGGAATACTGGGAGTAGACACGGGTTTAACAGGCAGTGGTTTTGCTGATGATAACGATGACTTTGATTCGGATAGTCCAACTAAAGGTTTTGCTTCCATTCCCGAGGCCATCGAAGACATTCGTAATGGAAAGATGGTAGTGGTTGTAGATGATGAGGATAGAGAAAATGAAGGGGACCTAATAATGGCAGCACAGTTGGCAACACCTGAGGCTATGGCTTTTATTGTGAAGCATGGGACAGGTATAGTTTGTATAAGCATGAAAGAGGAAGATCTAGAGAGATTAGAGCTTCCTTTGATGGTCAGCAGTCAGGATAATGATGAGAAACTCCGCACAGCATTCACTGTGACTGTGGATGCCAAACATGGTACCTCCACAGGGGTGTCAGCTCAAGATAGGGCAACAACAGTTTTGGCCCTTGCATCCAGAGATTCAAAACCAAGTGATTTCAACCGCCCAGGCCATATTTTCCCCCTAAAATACAGGGAAGGTGGTATCTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTGGCAGTACTTGCTGGCTTGGATCCTGTTGCAGTTCTATGTGAGGTTGTGGATGATGATGGCTCCATGGCTAGATTACCTAAGCTTCGCCAATTTGCTGAGCGTGAAAATTTGAAAATTATATCTATTGCTGACTTGATAAGGTATAGAAGAAAGAGAGATAAATTAGTGGAACGCGCTGGTGCTGCACTAATACCCACAATGTGGGGGCCATTCACAGCTAACTGTTATAGGTCACTTTTAGACGGGATGGAGCATATTGCGATGGTAAAGGGTGACATTGGGGATGGATGTGATGTTCTTGTGAGAGTACATTCAGAGTGTCTCACAGGAGACATATTTGGATCTGCCAGGTGTGACTGTGGAAATCAGCTTGCTCTTGCAATGCAACAGATTGAGGCTGCTGGTAGAGGCGTGTTAGTATATCTTCGTGGACATGAAGGAAGGGGTATTGGATTAGGCCACAAGCTTCGTGCTTATAACCTACAGGATGAGGGAAGGGATACCGTAGAAGCCAACGAGGAGTTGGGATTGCCTGTTGACTCAAGAGAGTATGGAATTGGTGCACAGATATTGAGGGACTTGGGTGTTCGTTCTATGAAGCTGATGACAAACAATCCGGCAAAATATGTTGGGCTCAAAGGTTATGGTTTGTCAATTTCTGGTAGGATCCCATTGTTATCACTTATAACTAAAGAAAACAGGAAATACTTGGAAACCAAACGTGTGAAAATGGGGCACGCGTATGGCTTGGAATTTTACAACAAATTGAATGGTAGTGACAATGGAAATGGTAATGCTGGTAGTGTTGATGATTCCAATACTGCTCCTGGCACATAA 1644 0.4404 MASSLNLSTPSLSRPRACKNFKLFNQLSSINSSKLHMRGSDLAFVRLSSKFSSCLNAVSRIKAALTSGGGDLKDEDMVGVESAQPDPVALGILGVDTGLTGSGFADDNDDFDSDSPTKGFASIPEAIEDIRNGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCISMKEEDLERLELPLMVSSQDNDEKLRTAFTVTVDAKHGTSTGVSAQDRATTVLALASRDSKPSDFNRPGHIFPLKYREGGILKRAGHTEASVDLAVLAGLDPVAVLCEVVDDDGSMARLPKLRQFAERENLKIISIADLIRYRRKRDKLVERAGAALIPTMWGPFTANCYRSLLDGMEHIAMVKGDIGDGCDVLVRVHSECLTGDIFGSARCDCGNQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLSISGRIPLLSLITKENRKYLETKRVKMGHAYGLEFYNKLNGSDNGNGNAGSVDDSNTAPGT 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05004 547 Gene3D GTP cyclohydrolase II 325 495 IPR036144 -
Vivi5g05004 547 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 121 318 IPR000422 GO:0008686|GO:0009231
Vivi5g05004 547 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 119 515 IPR016299 GO:0009231
Vivi5g05004 547 Hamap GTP cyclohydrolase-2 [ribA]. 323 519 IPR000926 GO:0003935|GO:0009231
Vivi5g05004 547 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 111 324 - -
Vivi5g05004 547 Gene3D DHBP synthase 108 324 - -
Vivi5g05004 547 CDD GTP_cyclohydro2 324 515 IPR000926 GO:0003935|GO:0009231
Vivi5g05004 547 FunFam Riboflavin biosynthesis protein RibBA 325 496 - -
Vivi5g05004 547 NCBIfam GTP cyclohydrolase II 330 515 IPR000926 GO:0003935|GO:0009231
Vivi5g05004 547 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 125 317 IPR000422 GO:0008686|GO:0009231
Vivi5g05004 547 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 118 322 IPR000422 GO:0008686|GO:0009231
Vivi5g05004 547 PANTHER GTP CYCLOHYDROLASE II-RELATED 118 518 - -
Vivi5g05004 547 Pfam GTP cyclohydrolase II 330 493 IPR032677 -
Vivi5g05004 547 SUPERFAMILY YrdC/RibB 119 321 IPR017945 -
Vivi5g05004 547 SUPERFAMILY RibA-like 323 494 IPR036144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05004 Vivi-Chr5 150625386 150631633 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05004 K14652 - gmx:100791686 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05004 5 150625386 150631633 Vivi5g05004 5 150625386 150631633 ECH
Vivi5g05004 5 150625386 150631633 Vivi5g05004 5 150625386 150631633 PCT