Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05169 ATGGCTTCTTCTCTCAATCTCTCCACACCTTCTCTCTTGTGCCACAGGGAAAGCAAACATTTCAAATTGTTCAATGGATTGCACTTTGTAAATCCATCTGTGACAAATGTGACTAGATCGGAGTGGGGCTTTGTCCTGCTGAACCCTGCTGTTGGCAGAATTAATGCTACATTGACCTCTGGAGGAGGAGGCGTTGAACCAGTTGGAACTAAGGTACAACCTGGTGCAATAGCATTTGAAACACTAGGAGCAGACACAGTGCTAACAGGCAATGGTTTTGCTGATGAAATTGATGAATGTGAATTGGACATTCCAACAGAAGGTTTTTCTTCCGTACAAGAGGCCATTGAAGACATTAGGAATGGAAAGATGGTAGTTGTTGTGGATGATGAGGACAGAGAAAATGAAGGAGACTTAATAATGGCAGCAGAGTTGGCAACACCTGAGGCTATGGCTTTTATTGTGAAACATGGAACTGGGATAGTTTGTGTGAGCATGAAAGAGGAAGATCTGGAGAGGTTGGACATTCCTTTGATGGTGAACAATCGGTATAATGAAGAGAAACTTCATACAGCGTTTACTGTGACAGTGGATGCTAGAGATGGTACCACCACAGGGGTGTCAGCTCATGATAGGACAACAACAGTTTTGGCCCTTGCATCCAGAGATTCAAAGCCAATTGATTTCACTCGCCCAGGCCATATTTTCCCCCTAAAATACAGGGAAGGTGGAGTCTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGCCATACTTGCTGGTTTGAATCCTGTGGCAGTTCTGTGTGAGATTGTGGATGATGATGGTTCCATGGCTAGATTACCTAAGCTTCGCGAGTTTGCAAAGCATGAAAATTTGAAAATTATATCTATTGCTGACCTAATAAGGTATCGAAGGAAGAGAGATAAACTTATAGAACGTGCTGGTGCTGCAGGAATACCAACAATGTGGGGGCCATTCATAGCTCACTGTTATAGGTCACTTTTAGATGGGATTGAGCATGTTGCAATGGTTAAGGGTGACATTGGAGATGGACAAAATGTTCTTGTGAGGGTTCACTCAGAGTGTCTCACAGGAGACATATTTGGATCTGCCAGATGTGACTGTGGAAATCAGCTTGCTCTTGCAATGCAACAGATTGAGGCTACTGGTAGAGGTGTATTGGTATATCTTCGTGGACATGAAGGAAGGGGTATTGGCTTGGGCCACAAGCTTCGTGCTTATAAGCTACAAGATGCTGGAAGGGATACTGTTGAAGCTAATGAGGAGTTGGGCTTACCAGTTGACTCAAGGGAGTATGGAATTGGTGCACAGATGCTGAGGGACTTGGGTGTTCGTTCTATGAAGCTGATGACAAACAATCCAGCAAAATATATCGGGTTGAAAGGCTATGGTTTGACAATTTCTGGTAGGATCCCATTGCTGTCACTTATCACAAAAGAAAACAGGAAATACATGGAGACCAAACGTGTGAAAATGGGCCACGTCTATGGTGTGGAATTTAACGACGAATTGAACACTGGCAATGGCAAAGCCAGTAATGCTGATGATTCTAATGTTGCTCCTGGCTCATAA 1602 0.437 MASSLNLSTPSLLCHRESKHFKLFNGLHFVNPSVTNVTRSEWGFVLLNPAVGRINATLTSGGGGVEPVGTKVQPGAIAFETLGADTVLTGNGFADEIDECELDIPTEGFSSVQEAIEDIRNGKMVVVVDDEDRENEGDLIMAAELATPEAMAFIVKHGTGIVCVSMKEEDLERLDIPLMVNNRYNEEKLHTAFTVTVDARDGTTTGVSAHDRTTTVLALASRDSKPIDFTRPGHIFPLKYREGGVLKRAGHTEASVDLAILAGLNPVAVLCEIVDDDGSMARLPKLREFAKHENLKIISIADLIRYRRKRDKLIERAGAAGIPTMWGPFIAHCYRSLLDGIEHVAMVKGDIGDGQNVLVRVHSECLTGDIFGSARCDCGNQLALAMQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYKLQDAGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRSMKLMTNNPAKYIGLKGYGLTISGRIPLLSLITKENRKYMETKRVKMGHVYGVEFNDELNTGNGKASNADDSNVAPGS. 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05169 533 SUPERFAMILY RibA-like 312 483 IPR036144 -
Seca12g05169 533 CDD GTP_cyclohydro2 313 504 IPR000926 GO:0003935|GO:0009231
Seca12g05169 533 SUPERFAMILY YrdC/RibB 108 310 IPR017945 -
Seca12g05169 533 PANTHER GTP CYCLOHYDROLASE II-RELATED 107 507 - -
Seca12g05169 533 NCBIfam GTP cyclohydrolase II 319 505 IPR000926 GO:0003935|GO:0009231
Seca12g05169 533 Gene3D GTP cyclohydrolase II 314 484 IPR036144 -
Seca12g05169 533 Hamap GTP cyclohydrolase-2 [ribA]. 312 508 IPR000926 GO:0003935|GO:0009231
Seca12g05169 533 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 107 311 IPR000422 GO:0008686|GO:0009231
Seca12g05169 533 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 113 306 IPR000422 GO:0008686|GO:0009231
Seca12g05169 533 Pfam GTP cyclohydrolase II 319 482 IPR032677 -
Seca12g05169 533 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 108 504 IPR016299 GO:0009231
Seca12g05169 533 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 109 307 IPR000422 GO:0008686|GO:0009231
Seca12g05169 533 FunFam Riboflavin biosynthesis protein RibBA 314 485 - -
Seca12g05169 533 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 100 313 - -
Seca12g05169 533 Gene3D DHBP synthase 99 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05169 Seca-Chr12 139967250 139971091 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05169 K14652 - gmx:100791378 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05169 12 139967250 139971091 Seca12g05169 12 139967250 139971091 ECH
Seca12g05169 12 139967250 139971091 Seca6g05117 6 118364485 118369869 PCT