Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02413 ATGGCCTCTTCTATCAGTCTCTCCACTCCTTTCTACCGCCCTAGTGTATGCAAACAATTGAAATTGTTCACTGGGTTGCACAAGTTCTCACTCAGTGGACATGGGTCGGATTTGGCCTTTGTCCAACTCAACTCCAGTGCTACTTTTAGAATTAAAGCTACATTGACCTCTGGACGAGGAGTCTTGGGATCTTATCCAATCAGTAATGGTGTTGGAGCTGAGGGGCAACGTGATGTCGCGGCATTTGGAACTCCGGGAATAGACACAGCGCTGCCAGCAGGTAGTGGTTTTTCTGATAATGATGATGACGAGTATGACTTCGATAGTCCAACAGAAGGTTTTGCTTCCGTACCGCAGGCCATTGAAGACATTAGGAACGGAAAGATGGTAGTGGTTGTAGATGACGAGGATAGGGAAAATGAAGGAGACCTGATAATGGCTGCGGAGTTGGCTACACCTGAGGCCATGGCTTTTATTGTGAAGCATGGAACTGGGATAGTGTGTATAAGCATGAAGGAGGAAGATTTGGAGAGATTGGACCTTCCTTTGATGGTAAACAGTCAGTATAATGACGAGAAACTTCGCACAGCGTTCACTGTTACAGTGGATGCTAAACATGGTACTACCACAGGGGTGTCAGCTCGTGATAGGGCTACAACAGTCCTTGCCCTTGCATCCAAAGATTCAAAACCAAGTGATTTCAACCGTCCAGGCCATATTTTCCCGCTAAAATACAGGGAGGGTGGTGTGCTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGCCATACTTGCTGGTCTGAATCCTGCGGCAGTTCTGTGTGAGATTGTGGATGATGATGGTTCAATGGCTAGATTACCTAAGCTTCGCCAGTTTGCAGAGCGTGAAAATTTAAAAATTGTTTCTATTGCTGACTTAATAAGATATAGAAGGAAGAGAGATAAACTAGTAGAGCCTGCTGGTTCTGCAGTAATACCAACAATGTGGGGGCCATTTACAGCTAACTGCTATAGGTCGCTTTTAGATGGCATTGAGCATATTACAATGGTTAAGGGTGACATTAGTGATGGACATGATGTACTTGTGAGGGTACACTCAGAGTGTCTCACAGGAGACATATTTGGATCTGCCAGATGTGACTGTGGAAATCAGCTTTCTATTGCAATGCAACAGATTGAGACTGCTGGTAGAGGTGTATTGGTCTATCTTCGTGGACATGAAGGAAGGGGCATTGGGTTGGGCCACAAACTTCGTGCCTATAACCTACAGGATGATGGACGGGACACTGTAGAGGCTAATGAAGAGTTGGGATTGCCTGTTGACTCAAGGGAGTATGGAATTGGTGCACAGATTTTGAGGGACTTGGGTGTTCGTTCTATGAAGCTAATGACAAACAATCCAGCAAAATATGTGGGGCTCAAAGGTTATGGTTTGACAATTTCCGGTAGGATACCATTGTTATCACTTGTCACAAAAGAGAACAAGAGATACTTAGAGACCAAACGTGTGAAAATGGGTCACGTATATGGCTTGCCAGAAAGTGGCAATGGTAAAGCCGGCAGTGGTGATGATTCTAAAGCTGCTCCTGGCTTATAG 1602 0.4513 MASSISLSTPFYRPSVCKQLKLFTGLHKFSLSGHGSDLAFVQLNSSATFRIKATLTSGRGVLGSYPISNGVGAEGQRDVAAFGTPGIDTALPAGSGFSDNDDDEYDFDSPTEGFASVPQAIEDIRNGKMVVVVDDEDRENEGDLIMAAELATPEAMAFIVKHGTGIVCISMKEEDLERLDLPLMVNSQYNDEKLRTAFTVTVDAKHGTTTGVSARDRATTVLALASKDSKPSDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAILAGLNPAAVLCEIVDDDGSMARLPKLRQFAERENLKIVSIADLIRYRRKRDKLVEPAGSAVIPTMWGPFTANCYRSLLDGIEHITMVKGDISDGHDVLVRVHSECLTGDIFGSARCDCGNQLSIAMQQIETAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLTISGRIPLLSLVTKENKRYLETKRVKMGHVYGLPESGNGKAGSGDDSKAAPGL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02413 533 FunFam Riboflavin biosynthesis protein RibBA 319 490 - -
Phco4g02413 533 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 119 311 IPR000422 GO:0008686|GO:0009231
Phco4g02413 533 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 105 318 - -
Phco4g02413 533 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 115 312 IPR000422 GO:0008686|GO:0009231
Phco4g02413 533 Gene3D DHBP synthase 105 318 - -
Phco4g02413 533 Pfam GTP cyclohydrolase II 324 487 IPR032677 -
Phco4g02413 533 SUPERFAMILY RibA-like 317 488 IPR036144 -
Phco4g02413 533 PANTHER GTP CYCLOHYDROLASE II-RELATED 112 512 - -
Phco4g02413 533 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 113 509 IPR016299 GO:0009231
Phco4g02413 533 MobiDBLite consensus disorder prediction 511 533 - -
Phco4g02413 533 Hamap GTP cyclohydrolase-2 [ribA]. 317 513 IPR000926 GO:0003935|GO:0009231
Phco4g02413 533 NCBIfam GTP cyclohydrolase II 324 510 IPR000926 GO:0003935|GO:0009231
Phco4g02413 533 SUPERFAMILY YrdC/RibB 113 315 IPR017945 -
Phco4g02413 533 CDD GTP_cyclohydro2 318 509 IPR000926 GO:0003935|GO:0009231
Phco4g02413 533 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 112 316 IPR000422 GO:0008686|GO:0009231
Phco4g02413 533 Gene3D GTP cyclohydrolase II 319 489 IPR036144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02413 Phco-Chr4 45322901 45327053 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02413 4 45322901 45327053 Phco4g02413 4 45322901 45327053 ECH
Phco4g02413 4 45322901 45327053 Phco11g00206 11 1348724 1353002 PCT