Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1149 ATGGCTTCGGCGGCGAGGCTAGATCTGGACGGAAACGCCATCAAGCCGATGACGATTTGCATGATCGGCGCCGGAGGATTCATCGGATCGCACCTCTGTGAGAAGCTCATGGCTGAGACGATGCACAAGGTCTTGGCCGTTGATGTCTACAATGACAAGATCAGGCACCTTCTCGAGCCGGCTGCACATCCTTGGTCCGATCGCATTCAGTTTCACCGCATCAACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCACTTCCAGTGGTGAAATACTGTTCAGAAAACAACAAGCGTCTCATTCACTTCTCGACTTGTGAAGTCTATGGGAAAACGATTGGGAGCTTTCTTCCCAAAGATTCACCTCTCCGGCAGGATCCAGCTTACTATCTTCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTTCAATTGAGAAGCAGAGATGGTCCTATGCCTGTGCAAAGCAATTAATTGAGAGGTTGATTTATGCTGAAGGTGCAGAGAATGGCCTAGAGTTCACCATTGTGAGGCCTTTTAACTGGATTGGGCCTAGAATGGATTTCATTCCTGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGGGTTCTGGCATGCTTCAGCAATAACCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTGATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAACAATGAAGCTACAGTTAAGCAGCTTGCAGAAATGATGACTGAGGTTTATGCAAAGGTGAGTGGGGAACCTTCTTTGGAGGTACCAACTGTTGATGTAAGCTCCAAAGAATTCTATGGTGAAGGATATGATGACAGTGACAAGAGAATTCCAGACATGACCATAATCAATAAACAACTTGGTTGGAACCCTAAGACATCACTCTGGGATTTGCTTGAGTCAACCCTCACCTATCAGCACAGGACATATGCTGAGGCTATTAAGCAGGCCATTGCGAAGCCAGTTGCATCTTAA 1167 0.4679 MASAARLDLDGNAIKPMTICMIGAGGFIGSHLCEKLMAETMHKVLAVDVYNDKIRHLLEPAAHPWSDRIQFHRINIKHDSRLEGLIKMADLTVNLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYLLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIDNPGRANGHIFNVGNPNNEATVKQLAEMMTEVYAKVSGEPSLEVPTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHRTYAEAIKQAIAKPVAS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1149 388 Gene3D - 16 380 - -
Vvi3g1149 388 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 17 373 - -
Vvi3g1149 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 371 IPR036291 -
Vvi3g1149 388 Pfam NAD dependent epimerase/dehydratase family 19 289 IPR001509 -
Vvi3g1149 388 FunFam UDP-D-apiose/UDP-D-xylose synthase 2 17 380 - -
Vvi3g1149 388 CDD Arna_like_SDR_e 18 373 IPR045869 GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1149 Vvi-Chr3 15559272 15562058 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1149 K12449 - vvi:100262362 791.956