Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01636 ATGGCTTCTTCTCTCAGTCTCTCCACTCCTCCTCTCTATCGCCCTAGGGTATGCAAACATTTCAAATTGTTCAATGGGTTGCAAAAGTTTTCATTCAATGGACATGGGTCGGATTTGGCTATGGTCCAACTCAACTCCAGAGTCTCCAGTGCTGTTGGTAGAATTAGAGCTACATTGACCTCTGAAGGAGGAGACTTAGGATCTTATCTGAAGAGCTCTGATGTTGTGACCAATCGTGTTGGAACTGAGGCACAGCGTGGTGATGTCGTAGCGTTTGGAACACTGGGAGCAGACACAGCAGTGCCAGCAGACAGTGGTTTTTCAGATGATGAAGATGAGCATGATTTCGATAGTCCAACGGAAGGTTTTGCTTCCATACCGGAGGCCATTGAAGACATTAGGAATGGAAAGATGGTAGTGGTTGTAGATGACGAGGACAGGGAAAATGAAGGAGACTTGATAATGGCGGCCCAGTTGGCAACACCTGAGGCTATGGCTTTTATTGTGAAGCATGGAACTGGGATAGTTTGTATAAGCATGAAGGAGGAAGATTTGGAGAGATTGGAGCTTCCTTTGATGGTGAACAGTCAGTATAACGATGAGAAACTTCGCACAGCATTCACTGTGACAGTGGATGCTAAACATGGTACTACCACAGGGGTGTCAGCTCATGATAGGGCAACAACTGTCTTGGCCCTTGCATCTAAAGATTCAAAACCAAGTGATTTCAACCGCCCAGGCCATATTTTCCCACTAAAATACAGGGAGGGTGGTGTGCTGAAGAGAGCTGGACACACAGAAGCTTCAGTTGATCTTGCCATACTTGCTGGTTTGAATCCTGTGGCAGTTCTGTGTGAGATTGTGGATGATGATGGTTCCATGGCTAGATTACCTAAGCTTCGCCAGTTTGCAGAGCGTGAAAATTTAAAAATTGTATCTATTGCTGACTTAATAAGGTATGCAAGGAAGAGAGATAAACTAGTAGAGCGTGCTGGTGCTGCACTAATACCAACAATGTGGGGGCCATTTGTAGCTAACTGCTATAGGTCACTTTTAGATGGGATGGAGCATATTGCAATGGTTAAGGGTGACATTGGGGATGGACATGATGTACTTGTGAGGGTACACTCAGAGTGTCTCACAGGAGACATATTTGGATCTGCCAGATGTGACTGTGGAAATCAGCTTGCTCTTGCAATGCAACAGATTGAGGCTGCTGGTAGAGGTGTTTTAGTATATCTTCGCGGACATGAAGGAAGGGGCATTGGGTTGGGCCACAAACTTCGTGCTTATAACCTACAGGATGATGGACGGGACACCGTAGAAGCCAATGAGGAGTTGGGATTGCCTGTTGACTCAAGGGAATATGGAATTGGTGCACAGATTTTGAGGGACTTGGGTGTTCGTTCGATGAAGCTAATGACAAACAATCCAGCAAAATATGTCGGGCTCAAAGGTTATGGTTTGACAATATCTGGTAGGATCCCATTGATATCACTCATCACAAAAGAGAACAAGCGATACTTGGAGACCAAACGTGTGAAAATGGGTCACGTATATGGCTTGGAATTTAACAGCAAATTGAACTGTCTAGACAGTGGCAATGGGAAAGCCAATAGTGATGATGATGATTCTAATGCTGCTCCTGGCTTATAA 1656 0.4505 MASSLSLSTPPLYRPRVCKHFKLFNGLQKFSFNGHGSDLAMVQLNSRVSSAVGRIRATLTSEGGDLGSYLKSSDVVTNRVGTEAQRGDVVAFGTLGADTAVPADSGFSDDEDEHDFDSPTEGFASIPEAIEDIRNGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCISMKEEDLERLELPLMVNSQYNDEKLRTAFTVTVDAKHGTTTGVSAHDRATTVLALASKDSKPSDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAILAGLNPVAVLCEIVDDDGSMARLPKLRQFAERENLKIVSIADLIRYARKRDKLVERAGAALIPTMWGPFVANCYRSLLDGMEHIAMVKGDIGDGHDVLVRVHSECLTGDIFGSARCDCGNQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRSMKLMTNNPAKYVGLKGYGLTISGRIPLISLITKENKRYLETKRVKMGHVYGLEFNSKLNCLDSGNGKANSDDDDSNAAPGL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01636 551 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 128 320 IPR000422 GO:0008686|GO:0009231
Pumo6g01636 551 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 122 518 IPR016299 GO:0009231
Pumo6g01636 551 SUPERFAMILY RibA-like 326 497 IPR036144 -
Pumo6g01636 551 NCBIfam GTP cyclohydrolase II 333 519 IPR000926 GO:0003935|GO:0009231
Pumo6g01636 551 Gene3D DHBP synthase 111 327 - -
Pumo6g01636 551 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 114 327 - -
Pumo6g01636 551 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 121 325 IPR000422 GO:0008686|GO:0009231
Pumo6g01636 551 Gene3D GTP cyclohydrolase II 328 499 IPR036144 -
Pumo6g01636 551 SUPERFAMILY YrdC/RibB 122 324 IPR017945 -
Pumo6g01636 551 CDD GTP_cyclohydro2 327 518 IPR000926 GO:0003935|GO:0009231
Pumo6g01636 551 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 124 320 IPR000422 GO:0008686|GO:0009231
Pumo6g01636 551 PANTHER GTP CYCLOHYDROLASE II-RELATED 121 521 - -
Pumo6g01636 551 Hamap GTP cyclohydrolase-2 [ribA]. 326 522 IPR000926 GO:0003935|GO:0009231
Pumo6g01636 551 FunFam Riboflavin biosynthesis protein RibBA 328 499 - -
Pumo6g01636 551 Pfam GTP cyclohydrolase II 333 496 IPR032677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01636 Pumo-Chr6 24013630 24018355 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01636 K14652 - gmx:100791378 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01636 6 24013630 24018355 Pumo6g01636 6 24013630 24018355 ECH
Pumo6g01636 6 24013630 24018355 Pumo2g01060 2 15662676 15667418 PCT