Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1637 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01053 . . . . . . . . . . . Gma10g02083 Gma20g01633 . . Gso10g1952 Gso10g1952 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g2247 . . . . . . . Mtr1g3561 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto8g2365 Tpr1g0935 . . . Tsu01g04221 . . . . . . . . . . . . .
Vvi18g1638 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1639 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car06g02942 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1640 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1641 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1643 Acco02g3460 . Accr2g00458 . . . . . . . . . . . Alju01g3445 . . . . . . . . . Bisa03g2852 . . . . . . . Dere01g0422 . . . Enph2g2459 . Glsi12g0889 . . . . . . . . . Lal13g0097 Lal12g0121 . . Lal2g1053 . Lan20g0113 Lan20g0113 . . Lan20g0113 . Lapu7g01881 . Lasa6g03853 . Lele05g2558 . Lele07g2574 Lele08g2476 . . . . Lja5g0812 . . . Mepo4g04067 . Mesa1g04414 . Mibi02g3159 . . . . . Phco6g02266 . Prci1g0464 . . . Pste4g02338 . . . . . Pumo3g01218 . Pvu7g0908 . Rops6g02513 . Seca8g07181 . Spst10g00758 . . . . . . . Trre1g05123 . . . Vian3g00790 . . . Vimu3g02831 . Viun7g03000 . Vivi1g04648 . . .
Vvi18g1644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1645 . . . . . . Aed7g0806 . . . . . . . . . . . . . . . . . . . . . . . Cca08g00907 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu9g0178 . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi18g1636 Chr18 21243516 21243830 -
Vvi Vvi18g1637 Chr18 21252813 21263341 -
Car Car04g01053 Chr04 10685039 10689267 -
Gma Gma10g02083 Chr10 48357318 48360932 -
Gma Gma20g01633 Chr20 43411966 43415890 +
Gso Gso10g1952 Chr10 46485401 46489134 -
Gso Gso10g1952 Chr10 46485401 46489134 -
Mal Mal1g2247 Chr1 29680045 29683036 +
Mtr Mtr1g3561 Chr1 47307305 47310782 -
Sto Sto8g2365 Chr8 16004152 16007531 -
Tpr Tpr1g0935 Chr1 8043471 8046666 +
Tsu Tsu01g04221 Chr01 50048608 50051808 -
Vvi Vvi18g1638 Chr18 21278127 21293773 -
Vvi Vvi18g1639 Chr18 21307497 21331339 -
Car Car06g02942 Chr06 48590627 48621523 +
Vvi Vvi18g1640 Chr18 21335179 21344049 +
Vvi Vvi18g1641 Chr18 21352756 21403928 -
Vvi Vvi18g1642 Chr18 21437523 21439377 -
Vvi Vvi18g1643 Chr18 21443346 21459018 +
Acco Acco02g3460 Chr02 48644158 48648193 -
Accr Accr2g00458 Chr2 10356569 10360836 +
Alju Alju01g3445 Chr01 62869845 62877276 -
Bisa Bisa03g2852 Chr03 45645971 45657107 +
Dere Dere01g0422 Chr01 9301537 9307122 +
Enph Enph2g2459 Chr2 40892879 40897668 -
Glsi Glsi12g0889 Chr12 26579099 26586963 +
Lal Lal13g0097 Chr13 615672 620525 +
Lal Lal12g0121 Chr12 835830 839673 +
Lal Lal2g1053 Chr2 7305648 7308706 +
Lan Lan20g0113 Chr20 677570 685553 +
Lan Lan20g0113 Chr20 677570 685553 +
Lan Lan20g0113 Chr20 677570 685553 +
Lapu Lapu7g01881 Chr7 34824245 34829193 -
Lasa Lasa6g03853 Chr6 599290802 599296359 -
Lele Lele05g2558 Chr05 41334671 41338833 -
Lele Lele07g2574 Chr07 31136548 31144165 -
Lele Lele08g2476 Chr08 30448949 30452363 -
Lja Lja5g0812 Chr5 7684880 7690184 +
Mepo Mepo4g04067 Chr4 50392811 50397909 -
Mesa Mesa1g04414 Chr1 69606996 69624309 -
Mibi Mibi02g3159 Chr02 56336691 56341687 -
Phco Phco6g02266 Chr6 43865348 43870063 -
Prci Prci1g0464 Chr1 4355091 4359749 +
Pste Pste4g02338 Chr4 16746562 16752090 -
Pumo Pumo3g01218 Chr3 19626480 19632806 +
Pvu Pvu7g0908 Chr7 8918326 8924240 +
Rops Rops6g02513 Chr6 45568478 45576401 -
Seca Seca8g07181 Chr8 168050924 168056954 -
Spst Spst10g00758 Chr10 7943862 7948672 -
Trre Trre1g05123 Chr1 57438339 57443426 -
Vian Vian3g00790 Chr3 8322968 8327050 +
Vimu Vimu3g02831 Chr3 42554570 42559493 -
Viun Viun7g03000 Chr7 32999644 33003503 -
Vivi Vivi1g04648 Chr1 99196352 99200935 +
Vvi Vvi18g1644 Chr18 21471925 21496571 -
Vvi Vvi18g1645 Chr18 21551484 21565320 +
Aed Aed7g0806 Chr7 6117054 6123944 -
Cca Cca08g00907 Chr08 20605940 20610622 +
Ssu Ssu9g0178 Chr9 10979037 11025991 -