Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00907 ATGTGGATTGGCAACAAAATAATCATCCTTCTAACTCTGCTGTGTTTCTACGTAATTGGAATCAATTCACTACAAAATGAATACAATTTTGTTGTCAGAGAAGCTCGTTATACAAGACTCTGCAGCACAAAACCCATATTGACAGTGAATGGACAATTTCCAGGGCCAATTATTAGAGCCTACCATGGTGAAACGGTATATGTGAATGTTCACAATAAGGCAAAGTTCAACATCACCTTGCACTGGCATGGAGTGAAACAACCAAGGAATCCATGGTCAGATGGCCCTGAATTCATCACTCAGTGCCCCATAAAACCTGGAGGGAAGTTCAGGCAAAAGTTGATTTTTTCTATTGAGGAAGGGACCATTTGGTGGCATGCTCATAGTGATTGGGCAAGAGCCACTGTCCATGGACCTATCATTATTTATCCCCAACCGGGTACATCCTACCCTTTTCCCAAACCGGATGCAGAAGTACCTATTGTATTAGGAGAATGGTGGAAGAGTGAAGTCAAGGATGTCTATGATGAATTTCTCAGAACTGGAGGAACCCCAAATAACTCTGATGCTATAACTATAAATGGTCAACCTGGTGACCGTTTTCCCTGCTCAAAATCAGATACATTCAAGTTAAATGTACACCGCGGCAAGACTTATCTTCTGCGCATTGTCAATGCTGCACTCAATCTCAACCTCTTTCTCTCTGTTTCAAAGCACAATCTCACAGTTGTTGGTGCTGATAGCAGCTACAGCAAGCCAGTGACAAGAGATTACATATGCATATCTCCAGGACAAACTGTTGATGCATTGTTGCATGCCAACCAAGAGCCTAATGACTACTACATGGCTGCAAGGGCATATTCAAGTGCAGTTGGAGTTACCTTCAATAATGCCACAGCCACAGCTAGGATCCACTACAAAGAGAACCATACTCCAACTAAATCTCCTTCATTACCTTATCTCCCTCCCTATAATGACACACAAGCAGCATTTGACTACTATCGTAGCATCAAGGGCTTACCTGAAACATACCCTTATAAAGTCCCTACAAATATCACCACCCATTTGATGAACACCCTTTCAGTTAATACAGTTCCATGCTCTGAAGGCCAAACCTGTGCTGGACCAAATGGAACAAGTTTTGCTTCTAGTATGAACAACATAAGCTTTGAATCCCCCAACATTGACATCCTCCAAGCCTATTACTACCACATCACTGGGGTGTATGACAAGGGATTCCCTAGGTCTCCTCCATTGGTATTTAACTTTACTGCAGAGTATTTGCCTCTAGTACTTGAGATACCAAAGAAACGAACCAAGGTTGCAATTATTAAATATGGTTCAACAGTGGAAATTGTTTTCCAAGGGACAAACTTGGTCGCTGGGATAGACCACCCTATTCATCTTCATGGCACTAGTTTCTACGTTGTTGGATATGGGTTTGGGAATTTTGACAAACACAAGGACCCCATGACTTACAATCTCGTTAATCCTGCTCTTGCAAATACAGTACTAGTGCCTAAGAATGGTTGGGCCGCCATAAGGTACAGGGCTGCTAATCCAGGAGTGTGGTTTGTGCATTGCCATCTAGAACGTCACCTCTCTTGGGGCATGGAAACACTGTTTATTGTGACGAATGGAAAACGAAGTGATGAAAAATTACTACCTCCACCTCCAGATATGCCCCGTTGTTGA 1695 0.4265 MWIGNKIIILLTLLCFYVIGINSLQNEYNFVVREARYTRLCSTKPILTVNGQFPGPIIRAYHGETVYVNVHNKAKFNITLHWHGVKQPRNPWSDGPEFITQCPIKPGGKFRQKLIFSIEEGTIWWHAHSDWARATVHGPIIIYPQPGTSYPFPKPDAEVPIVLGEWWKSEVKDVYDEFLRTGGTPNNSDAITINGQPGDRFPCSKSDTFKLNVHRGKTYLLRIVNAALNLNLFLSVSKHNLTVVGADSSYSKPVTRDYICISPGQTVDALLHANQEPNDYYMAARAYSSAVGVTFNNATATARIHYKENHTPTKSPSLPYLPPYNDTQAAFDYYRSIKGLPETYPYKVPTNITTHLMNTLSVNTVPCSEGQTCAGPNGTSFASSMNNISFESPNIDILQAYYYHITGVYDKGFPRSPPLVFNFTAEYLPLVLEIPKKRTKVAIIKYGSTVEIVFQGTNLVAGIDHPIHLHGTSFYVVGYGFGNFDKHKDPMTYNLVNPALANTVLVPKNGWAAIRYRAANPGVWFVHCHLERHLSWGMETLFIVTNGKRSDEKLLPPPPDMPRC 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00907 564 CDD CuRO_1_LCC_plant 28 144 IPR034288 GO:0005507
Cca08g00907 564 TIGRFAM laccase: laccase 26 564 IPR017761 GO:0046274|GO:0048046|GO:0052716
Cca08g00907 564 Gene3D - 20 144 IPR008972 -
Cca08g00907 564 Gene3D - 155 340 IPR008972 -
Cca08g00907 564 ProSitePatterns Multicopper oxidases signature 2. 527 538 IPR002355 GO:0005507
Cca08g00907 564 Pfam Multicopper oxidase 32 145 IPR011707 GO:0005507
Cca08g00907 564 Pfam Multicopper oxidase 435 547 IPR011706 GO:0005507|GO:0016491
Cca08g00907 564 CDD CuRO_3_LCC_plant 408 547 IPR034289 GO:0005507
Cca08g00907 564 Pfam Multicopper oxidase 158 309 IPR001117 -
Cca08g00907 564 PANTHER LACCASE 17 564 - -
Cca08g00907 564 SUPERFAMILY Cupredoxins 18 168 IPR008972 -
Cca08g00907 564 SUPERFAMILY Cupredoxins 152 330 IPR008972 -
Cca08g00907 564 ProSitePatterns Multicopper oxidases signature 1. 522 542 IPR033138 -
Cca08g00907 564 CDD CuRO_2_LCC_plant 159 306 IPR034285 -
Cca08g00907 564 Gene3D - 371 564 IPR008972 -
Cca08g00907 564 PANTHER MULTI-COPPER OXIDASE 17 564 IPR045087 -
Cca08g00907 564 SUPERFAMILY Cupredoxins 375 564 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00907 Cca-Chr8 20605940 20610622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00907 K05909 - gmx:100788550 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00907 08 20605940 20610622 Cca08g00907 08 20605940 20610622 ECH
Cca08g00907 08 20605940 20610622 Cca02g02104 02 41238465 41241634 PCT