Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00790 ATGACGATGAGGGTTTCGGTTGTTTTAAGTGTTCTGTTCTTGATCCAGTTTTGGCCTGGGGAAGCTGAGAAATTTTCGGTGGATGGAAAGGTTTTGATTTTGGACGACTCCAACTTCGATTCCGCCATAGCTTCCTTTGATCACATCTTGGTTGACTTTTACGCTCCCTGGTGTGGTCACTGCAAGCGTCTTGCTCCCGAGTTAGATGCAGCTGCGCCTGTACTTGCAACCTTGAACAAACCCATTGTCATTGCAAAAGTAGATGCAGACAAACATACCAGCCTTGCAAAAAAATATGATGTTGATGCATATCCAACCATTTTGCTGTTTAATCATGGCATCCCCACCGAATACCGTGGACCAAGGAAGGCAGATTTACTCGTTAGATATCTGAAGAAGTTTGCTGCTTCTGATGTTTCCATTCTTGATTCAGATTCTGCCGTGAATACATTCGTTGCAGAAGCTGGACCTTTTTTCCCCATTTTTATAGGTTTCGGTTTGAAAAACACGATAATAGAAAAGTTTGGCATAAAGTACAAGAAAAATGCATGGTTTTCTGTGGCAAAGGACTTTTCAGAGGATCTCATGGTATTGTATGACTTTGATAAGATTCCTGCATTGGTTTCCCTGAATCCACAGTACAATGAGCGGAACACATTCTACGGACCCTTTGAAGATGAATTTTTGGAAGATTTTGTTAAACAAAACCTGATGCCTCTGGTCGTGCCGATATCCTACGAAACACTTAAGTTGGTGAAAGCAGATGGTAGGAAAGTAGTTTTGACCATTGTTGAAGATGAAGATGAAGAAAGATCAAGAGAATTGACTAAGTTATTGAAGGCTGCTGCATCTGCTAATCGTGACTTAGTATTTGGTTATGTTGGAGTCAAACAAATGGAAGAATTTGCTGAGCAGTTTGATATTAGTACTAAACTACCAAAAATGGTGGTTTGGGATAAAAGTGATGATTACCTTTCAGTTGTTGATTCAGAAAGTATTGAGGGGGAGGATCAGGCATCTCAAATCACTAAATTTCTGGAAGGATACAGGGAAGGAAGAACCATAAACAAAACATTCAGTGGACCTTCGCTGATGCAATTCATTCATCGGTCTTTTGACATTAGAATGGTATACATAATTGTTTTTGTTGTGGCATTACTGATACTTATTCAGAGCTTCAGTAAAGGAGGTGATGAGTACCATGCTGTACCAAATCAAGTTCAAGTTGATCGTGCAAGCAGTTCTGTTTCAGAAGCTGAAATCAAAGAGTATAAACCAGGTGACAAGGAAGACTAA 1296 0.3997 MTMRVSVVLSVLFLIQFWPGEAEKFSVDGKVLILDDSNFDSAIASFDHILVDFYAPWCGHCKRLAPELDAAAPVLATLNKPIVIAKVDADKHTSLAKKYDVDAYPTILLFNHGIPTEYRGPRKADLLVRYLKKFAASDVSILDSDSAVNTFVAEAGPFFPIFIGFGLKNTIIEKFGIKYKKNAWFSVAKDFSEDLMVLYDFDKIPALVSLNPQYNERNTFYGPFEDEFLEDFVKQNLMPLVVPISYETLKLVKADGRKVVLTIVEDEDEERSRELTKLLKAAASANRDLVFGYVGVKQMEEFAEQFDISTKLPKMVVWDKSDDYLSVVDSESIEGEDQASQITKFLEGYREGRTINKTFSGPSLMQFIHRSFDIRMVYIIVFVVALLILIQSFSKGGDEYHAVPNQVQVDRASSSVSEAEIKEYKPGDKED 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00790 431 ProSitePatterns Thioredoxin family active site. 50 68 IPR017937 -
Vian3g00790 431 Pfam Thioredoxin-like domain 191 346 - -
Vian3g00790 431 SUPERFAMILY Thioredoxin-like 236 355 IPR036249 -
Vian3g00790 431 Gene3D Glutaredoxin 20 143 - -
Vian3g00790 431 CDD PDI_a_family 32 131 - -
Vian3g00790 431 ProSiteProfiles Thioredoxin domain profile. 12 136 IPR013766 -
Vian3g00790 431 Gene3D Glutaredoxin 226 362 - -
Vian3g00790 431 PRINTS Thioredoxin family signature 57 66 - -
Vian3g00790 431 PRINTS Thioredoxin family signature 49 57 - -
Vian3g00790 431 PRINTS Thioredoxin family signature 100 111 - -
Vian3g00790 431 Pfam Thioredoxin 31 133 IPR013766 -
Vian3g00790 431 SUPERFAMILY Thioredoxin-like 25 134 IPR036249 -
Vian3g00790 431 FunFam Protein disulfide-isomerase 5-2 20 135 - -
Vian3g00790 431 PANTHER PROTEIN DISULFIDE ISOMERASE 6 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00790 Vian-Chr3 8322968 8327050 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g00790 K09580 - gmx:100791778 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00790 3 8322968 8327050 Vian3g00790 3 8322968 8327050 ECH