Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0113 ATGATAACAAAGATGAAGCTTTTGCTAGTTATTGGTGTTGTCTTGCTCATCCATTTTTGCTCCGTTAATGCTGAACCATTTTTATCTGTGGATGGAAAGGTGTTGGTGTTGGACGAATCCAACTTTGAATCTGCCATATCTTCCTTTGATCACATCCTTGTTGATTTCTACGCTCCCTGGTGTGGTCACTGCAAGCGTCTCTCCCCTGAGTTAGATGCAGCCGCGCCTGTACTTGCAGCCTTGAAGAACCCCATAGTGATAGCAAAAGTAGATGCCGACAAGTTTACCCGCCTTGCGAAAAAATATGATGTTGATGCATATCCAACCATTTTGCTGTTTAATCATGGCATCCCAACAGAATACCATGGACCAAGGAAAGCAGAGTTACTAGTTCGTTATCTAAAGAAATTTGCTGCTTCTGATGTTTCCATTCTTGATTCAGATTCTGCTGTCAATAAGTTTGTCGAAGAAGCTGGCACCTTTTTTCCCGTATATATTGGTTTTGGGTTGGACAGCTCTGCAATAGAAAAGTTAGCCATAAAGTATAAGAAAAATGCATGGTTTTCTGTGGCAAAGGATTTTTCAGAGGATCTCATGGTATCATATGACTTTGATAAAGTTCCTGCTTTGGTTTCCCTTAATCCAAAATACAACGAGCATAACACATTCTATGGCCCCTTTGAAGGGGAGTTTCTGGAAGATTTCGTTAAACAAAACCTGATTCCCTTAGCTGTGCCTGTATCTCATGACACACTTAAGTTGTTGGAAGGTGATGATAGGAAGATAGTTTTGACAATTGTTGAGGATGAAGATGAAGAAAGATCAAGAGAACTGGTAAAGCTATTGAAGGCTGCTGCATCTGCAAACCGTGACTTAATATTTGGTTATGTTGGAGTTAAACAGCGAGAAGAATTCGCTGAAAAATTTGATATCGGGACTAAACTACCAAAAATGGTCATTTGGGATAAAAGTGATGACTACCTTTCAGTTGTTGGTTCAGAAAGCATTGAGGGGGAGGATCAGGCAACACAAATAACTAAATTTGTAGAAGGTTACAGGGAAGGAAGAACCATAAAGAAAACAGTTAGTGGCCCTTCACTGATGAAATTTATTAATGGATCTTTTGACATTAGAATGGTGTACTTCCTTGTTTTTATTGTTGCAGTAGTGATGCTTATTCAGAACATCAATAAAGGAGACGATGAACATAATCGAATACCGAATCAAGATCATGTTCATCATGCAAGCTCAGTTTCAGAAGTTGAAAACAAAGAGTATAAAGCTGGAGACAAGCAAGATTAA 1302 0.3902 MITKMKLLLVIGVVLLIHFCSVNAEPFLSVDGKVLVLDESNFESAISSFDHILVDFYAPWCGHCKRLSPELDAAAPVLAALKNPIVIAKVDADKFTRLAKKYDVDAYPTILLFNHGIPTEYHGPRKAELLVRYLKKFAASDVSILDSDSAVNKFVEEAGTFFPVYIGFGLDSSAIEKLAIKYKKNAWFSVAKDFSEDLMVSYDFDKVPALVSLNPKYNEHNTFYGPFEGEFLEDFVKQNLIPLAVPVSHDTLKLLEGDDRKIVLTIVEDEDEERSRELVKLLKAAASANRDLIFGYVGVKQREEFAEKFDIGTKLPKMVIWDKSDDYLSVVGSESIEGEDQATQITKFVEGYREGRTIKKTVSGPSLMKFINGSFDIRMVYFLVFIVAVVMLIQNINKGDDEHNRIPNQDHVHHASSVSEVENKEYKAGDKQD* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0113 433 PRINTS Thioredoxin family signature 52 60 - -
Lan20g0113 433 PRINTS Thioredoxin family signature 60 69 - -
Lan20g0113 433 PRINTS Thioredoxin family signature 103 114 - -
Lan20g0113 433 ProSitePatterns Thioredoxin family active site. 53 71 IPR017937 -
Lan20g0113 433 Pfam Thioredoxin-like domain 178 333 - -
Lan20g0113 433 ProSiteProfiles Thioredoxin domain profile. 15 139 IPR013766 -
Lan20g0113 433 PANTHER PROTEIN DISULFIDE ISOMERASE 9 433 - -
Lan20g0113 433 SUPERFAMILY Thioredoxin-like 26 137 IPR036249 -
Lan20g0113 433 SUPERFAMILY Thioredoxin-like 239 361 IPR036249 -
Lan20g0113 433 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-2 9 433 - -
Lan20g0113 433 MobiDBLite consensus disorder prediction 403 433 - -
Lan20g0113 433 Gene3D Glutaredoxin 26 146 - -
Lan20g0113 433 CDD PDI_a_family 35 134 - -
Lan20g0113 433 Pfam Thioredoxin 34 136 IPR013766 -
Lan20g0113 433 Gene3D Glutaredoxin 229 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0113 Lan-Chr20 677570 685553 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0113 K09580 - gmx:100791778 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0113 20 677570 685553 Lan20g0113 20 677570 685553 ECH
Lan20g0113 20 677570 685553 Lan4g1791 4 26552022 26555761 LSH