Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1643 ATGGAAGGAAGACTGAGCGTGATGGGCGTGGGGGTGGCGACCCTCTCGATCTTTGCCCTTCTATTTTCATCAGTCTCCTCCCACGATTTCCCCACCGACGGCACCGTTCTCGAACTCCATGATTCCAACTTCGATTCCGCCATTTCTGCCTTCGACTTTATCCTCGTCGACTTCTACGCCCCTTGGTGCGGTCACTGCAAGCGTCTCGCTCCCGAGTTAGATGCAGCTGCTCCCGTTCTTGCCAGTCTGAAGGAACCCATCGTGATTGCTAAAGTAAATGCTGACAAATTTACCCGCCTTGCTGTTAAATATGACATTGACGGGTTTCCTACCCTCAAGCTCTTTATACGTGGTGTTCCCATGGACTACTATGGACCAAGGAAAGCAGATTTACTTGTTCGCTTCCTGAAAAAGTTTGTTGCTCCTGATGTCTCTGTTCTTGTTTCAGATTCTGCTATAAGTAGCTTTGTTGAAGCAGCTGGCACTCATTTTCCTATATATATAGGATTTGGCTTGAATGAGTCCATGATATCAAACTTAGCCATCAAATACAAGAAAAAGGCATGGTTTTCAGTGGCAAAGGATTTTTCAGAGGATGTGATGGTGGCTTATGACTTTGATAAGGTTCCTGCTTTGGTATCTCTTCATCCTAGTTACAATGAGCACAGTGTCTTCTATGGCCCCTTTGATGGAGAATTCTTGGAGGATTTTATGAAACAAACCTTGTTCCCTCTGGTTTTGCCCATAAATTATGATACGCTGAAGTTGTTGAAAGATGATGATAGGAAAATTTTTCTGACATTTGTGGATGATGAGCTTGATGAGAAGTCAAAGAAATTGATTAACTTATTGAAGGCTGCTGCATCTGCAAATCGCGACTTAGTATTTGGTTTCGTTGGGATCAAGCAGTGGGGTGAATTTGCTGATTCTTTTGGGGCTAATAAGAAGACAAAACTGCCAAAAATGGTTGTTTGGGATGGAGATAATCAGTACTTTGAGGTTATTGGTTCGGAAAGCTTTGATGAGATAGATCAAGGTTCCCAAATCACTCGATTCATTGAAGGGTATAAAGAAGGAAGAACAGTAGAGAAGAAAATTGGTGGTCCATCGCTGATAGGCTACATCAATTCACTAATTGGGATCAGAACTGTGTACATTATAGTTTTTGTGGTTGCAGTCATGATGATTATCCAAAGCATCAATAAAGAAGAACCTCTAACCATTGGTAGTGGAGAAGACCAGACTGATCAGGCTTGGAGCTCTTCCCTTACTGATGAAAGCAGAGAGGAATATCGGCCCAGAGACAAGGAAGATTAA 1317 0.4282 MEGRLSVMGVGVATLSIFALLFSSVSSHDFPTDGTVLELHDSNFDSAISAFDFILVDFYAPWCGHCKRLAPELDAAAPVLASLKEPIVIAKVNADKFTRLAVKYDIDGFPTLKLFIRGVPMDYYGPRKADLLVRFLKKFVAPDVSVLVSDSAISSFVEAAGTHFPIYIGFGLNESMISNLAIKYKKKAWFSVAKDFSEDVMVAYDFDKVPALVSLHPSYNEHSVFYGPFDGEFLEDFMKQTLFPLVLPINYDTLKLLKDDDRKIFLTFVDDELDEKSKKLINLLKAAASANRDLVFGFVGIKQWGEFADSFGANKKTKLPKMVVWDGDNQYFEVIGSESFDEIDQGSQITRFIEGYKEGRTVEKKIGGPSLIGYINSLIGIRTVYIIVFVVAVMMIIQSINKEEPLTIGSGEDQTDQAWSSSLTDESREEYRPRDKED* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1643 438 PANTHER PROTEIN DISULFIDE ISOMERASE 17 361 - -
Vvi18g1643 438 FunFam Protein disulfide-isomerase 5-2 24 140 - -
Vvi18g1643 438 CDD PDI_a_family 37 136 - -
Vvi18g1643 438 ProSitePatterns Thioredoxin family active site. 55 73 IPR017937 -
Vvi18g1643 438 MobiDBLite consensus disorder prediction 406 438 - -
Vvi18g1643 438 Gene3D Glutaredoxin 231 365 - -
Vvi18g1643 438 Pfam Thioredoxin-like domain 193 353 - -
Vvi18g1643 438 SUPERFAMILY Thioredoxin-like 242 360 IPR036249 -
Vvi18g1643 438 ProSiteProfiles Thioredoxin domain profile. 16 141 IPR013766 -
Vvi18g1643 438 MobiDBLite consensus disorder prediction 423 438 - -
Vvi18g1643 438 Pfam Thioredoxin 36 138 IPR013766 -
Vvi18g1643 438 Gene3D Glutaredoxin 24 148 - -
Vvi18g1643 438 PRINTS Thioredoxin family signature 62 71 - -
Vvi18g1643 438 PRINTS Thioredoxin family signature 105 116 - -
Vvi18g1643 438 PRINTS Thioredoxin family signature 54 62 - -
Vvi18g1643 438 SUPERFAMILY Thioredoxin-like 30 139 IPR036249 -
Vvi18g1643 438 MobiDBLite consensus disorder prediction 406 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1643 Vvi-Chr18 21443346 21459018 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1643 K09580 - vvi:100251498 853.203