Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0097 ATGATAACCAAGATGAGGCTTTTGCTAATTTTTGGTTTTGTCTTGCTGATTCACTTTTGCTCCGTTAATGCTGAACCATCGTTATCTGTGGATGGAAAGGTGTTGGTGTTGGACGAATCCAACTTCGAATCTGCCATATCCTCTTTTGATCACATCCTTGTTGATTTCTACGCTCCCTGGTGTGGTCACTGCAAGCGTCTCTCCCCAGAGTTAGATGCAGCCGCACCTGTACTTGCAGCCTTGAAGAACCCTATAGTGATAGCAAAAGTAGATGCGGACAAGTTTACCCGCCTTGCAAAAAAATATGACGTTGATGCATATCCAACCATTTTGCTGTTTAATCATGGCATCCCAACAGAATACCGTGGACCAAGGAAAGCAGAGTTACTAGTTCGTTATCTAAAGAAATTTGCTGCTTCTGATGTTTCCATTCTTGATTCAGATTCTGTTGTCAATAAGTTTGTCGAAGAAGCTGACACATTTTTCCCCATATATATTGGTTTTGGGTTGGACAGCTCTGCAATAGAAAAGTTAGCCATAAAGTATAAGAAAAATGCATGGTTTTCTGTGGCAAAGGATTTTTCAGAGGATCTCATGGTATCATATGATTTTGATAAAGTTCCTGCTTTGGTTTCCCTTAATCCAAAATACAATGAGCATAGCACATTCTATGGCCCCTTTGAAGGGGAGTTTCTGGAAGATTTTGTTAAGCAAAACCTGATTCCCTTAGTTGTGCCTGTATCTCATGACACACTTAAGTTGTTGGAAGGTGATGATAGGAAGATAGTTTTGACAATTGTTGAGGATGAAGATGAAGAAAGATCAAGAGAACTGGTAAAGCTATTGAAGGCTGCTGCATCTGCAAACCGTGACTTAATATTTGGTTATGTTGGAGTTAAACAGCTAGAAGAATTCGCTGAAAAATTTGATATTGGGACTAAACTACCAAAAATGGTCATTTGGGATAAAAGTGATGACTACCTTTCAGTTGTTGGTTCAGAAAGCATGGAGGGGGAGGATCAGGCAACAGTAATCACTAAATTTGTAGAAGGTTACAGGGAAGGAAGAACCATAAAGAAAACAGTTAGTGGCCCTTCACTGATGAAATTTATTCATGGGTCTTTTGACATTAGAATGGTGTACTTCCTTGTTTTTATAGTTGCAGTAGTAATGCTTATTCAGAACATCAATAAAGGAGATGATGAACAGCATAGAATACCGAATCAAGATCAGGTTCATCATGCAAGTTCAGTTCCAGAAGTTGAAAACAAAGAGTATAAAGCTGGAGACAAGGAAGATTAA 1302 0.3894 MITKMRLLLIFGFVLLIHFCSVNAEPSLSVDGKVLVLDESNFESAISSFDHILVDFYAPWCGHCKRLSPELDAAAPVLAALKNPIVIAKVDADKFTRLAKKYDVDAYPTILLFNHGIPTEYRGPRKAELLVRYLKKFAASDVSILDSDSVVNKFVEEADTFFPIYIGFGLDSSAIEKLAIKYKKNAWFSVAKDFSEDLMVSYDFDKVPALVSLNPKYNEHSTFYGPFEGEFLEDFVKQNLIPLVVPVSHDTLKLLEGDDRKIVLTIVEDEDEERSRELVKLLKAAASANRDLIFGYVGVKQLEEFAEKFDIGTKLPKMVIWDKSDDYLSVVGSESMEGEDQATVITKFVEGYREGRTIKKTVSGPSLMKFIHGSFDIRMVYFLVFIVAVVMLIQNINKGDDEQHRIPNQDQVHHASSVPEVENKEYKAGDKED 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0097 433 PRINTS Thioredoxin family signature 52 60 - -
Lal13g0097 433 PRINTS Thioredoxin family signature 60 69 - -
Lal13g0097 433 PRINTS Thioredoxin family signature 103 114 - -
Lal13g0097 433 Pfam Thioredoxin-like domain 178 332 - -
Lal13g0097 433 Pfam Thioredoxin 34 136 IPR013766 -
Lal13g0097 433 Gene3D Glutaredoxin 22 146 - -
Lal13g0097 433 SUPERFAMILY Thioredoxin-like 239 361 IPR036249 -
Lal13g0097 433 ProSitePatterns Thioredoxin family active site. 53 71 IPR017937 -
Lal13g0097 433 MobiDBLite consensus disorder prediction 417 433 - -
Lal13g0097 433 MobiDBLite consensus disorder prediction 408 433 - -
Lal13g0097 433 PANTHER PROTEIN DISULFIDE ISOMERASE 9 433 - -
Lal13g0097 433 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-2 9 433 - -
Lal13g0097 433 ProSiteProfiles Thioredoxin domain profile. 15 139 IPR013766 -
Lal13g0097 433 CDD PDI_a_family 35 134 - -
Lal13g0097 433 Gene3D Glutaredoxin 229 365 - -
Lal13g0097 433 SUPERFAMILY Thioredoxin-like 27 137 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0097 Lal-Chr13 615672 620525 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0097 K09580 - gmx:100791778 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0097 13 615672 620525 Lal13g0097 13 615672 620525 ECH
Lal12g0121 12 835830 839673 Lal13g0097 13 615672 620525 LSH