Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0178 ATGATCTTAGAGAATCATAATCTCCTACTAATCATTTTCGGGTTTCTGGTTATATGCAAGAGCCAGGGCAACGTtcattattatgattttgttCTGAAGGAAAAGAATTTCACAAAGTTGTGCAGCACGAAAAGCATACTGACTGTAAATGATAGTTTTCCAGGGCCAACAATTCGTGTTCATAAAGGAGATACAGCTTTTGTCACTGTCCACAATCAAGGAAGATATGGGGTGACTATTCACTGGCATGGTGTGAGGCAACCAAGGGATCCTTGGTCAGATGGACCTGAGAACATAACACAGTGCCCTATTCCACCAGGAACAAGATTCACTCAGAAGGTGGCCTTTACTGCAGAAGAAGGCACTCTTTTGTGGCATGCCCATAGTAGTTGGACTCGTGCCACTGTCCATGGTGCCATTGTCATTTTACCTGCCAATGGAACTTCATATCCTTTCCCTGAACCTTATAGACAAGAAACTCTTATCATTGGAGAGTGGTATAAGAGAGACGTGATGCAAATTATCAATTCAGCCCTGGCAAATGGTGGCGAGCCCAATGCATCAGATGCTTACACCATCAACGGCCAACCTGGTGACTTCTATAATTGCTCAAGAGAAACGACATATCGCTTTTTAGTTGATTATGGAAAGACATATCTTTTCCGCATAATAAATGCAGCAATGAACGAAGAACTTTTCTTCGGGGTTGCTAATCACAACCTCACACTTGTAGGCATTGATGCTTCCTACACAAAGCCCTTAAACACCAATTTCATCATGATAACCCCAGGACAAACAATGGATTTGTTGGTCACAGCAAACCAGCCAAAGGGTCTCTATTACATTGCTGCCAGTACTTTCTATGATGGCACTGCCACGTATGATAATTCCACCACAACGGCTATTCTGCAATACAGTGGGAATTAcacaccatcatcatcatccatTCCCCTGCCTAGGTTTCCTGCAGTGAATGACTCGGGAACcgtatttaattttactaagagCTTGAGGAATTTGGCAAGCCATGATCACCCTGCCGATGTGCCAACAAATGTGActagaaaaatttatatgacAGTATCAATGAATGAATTACCTTGTCAAAATCCAAATGGAAGTTGTTCAGGACCTAATGGAACAAGACTGGCTTCAAGCTTAAACAATATAAGTTTTCAGATCCCACAGATTGATATACTTCAAGCATACTACGGgAACATTTCAGGAGTTTTTAGTAAGGACTTTCCGGATCAGCcacatttctttttcaacttcaCAGGTGATACAGGAAACAATACTCTAATTCCAAGCACAGGAACCAGGGTGCTAATGTTTGACTATAATGAAGTTGTTGAACTTGTGTGGCAAGGAACTAGTATTATCACTGCTGAGAATCACGCCATGCACCTTCATGGTTTTAGCTTCTTTGTGGTGGGTGTGGGGGCAGGAAATTTCAACAATGTGACAGATCCAAAATCCTACAATTTAATTGATCCACCAGAAGTTAATACCATTGGTCTTCCAAAGAATGGGTGGCTTGCCGTGAGATTTGTTGCGAACAATCCAGGGGTATGGTTCATGCATTGTCATCTTGAGAGGCACAGTAGCTGGGGTATGGATACGGTGCTCATTGTGAGAGATGGAGGTACCACGCAGACTAGTATGGTTCCACCTCCTAAATACATGCCACCTTGTTCATAA 1701 0.4051 MILENHNLLLIIFGFLVICKSQGNVHYYDFVLKEKNFTKLCSTKSILTVNDSFPGPTIRVHKGDTAFVTVHNQGRYGVTIHWHGVRQPRDPWSDGPENITQCPIPPGTRFTQKVAFTAEEGTLLWHAHSSWTRATVHGAIVILPANGTSYPFPEPYRQETLIIGEWYKRDVMQIINSALANGGEPNASDAYTINGQPGDFYNCSRETTYRFLVDYGKTYLFRIINAAMNEELFFGVANHNLTLVGIDASYTKPLNTNFIMITPGQTMDLLVTANQPKGLYYIAASTFYDGTATYDNSTTTAILQYSGNYTPSSSSIPLPRFPAVNDSGTVFNFTKSLRNLASHDHPADVPTNVTRKIYMTVSMNELPCQNPNGSCSGPNGTRLASSLNNISFQIPQIDILQAYYGNISGVFSKDFPDQPHFFFNFTGDTGNNTLIPSTGTRVLMFDYNEVVELVWQGTSIITAENHAMHLHGFSFFVVGVGAGNFNNVTDPKSYNLIDPPEVNTIGLPKNGWLAVRFVANNPGVWFMHCHLERHSSWGMDTVLIVRDGGTTQTSMVPPPKYMPPCS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0178 566 CDD CuRO_1_LCC_plant 28 144 IPR034288 GO:0005507
Ssu9g0178 566 SUPERFAMILY Cupredoxins 350 563 IPR008972 -
Ssu9g0178 566 Pfam Multicopper oxidase 33 145 IPR011707 GO:0005507
Ssu9g0178 566 Gene3D - 372 566 IPR008972 -
Ssu9g0178 566 PANTHER LACCASE 22 565 - -
Ssu9g0178 566 TIGRFAM laccase: laccase 24 565 IPR017761 GO:0046274|GO:0048046|GO:0052716
Ssu9g0178 566 SUPERFAMILY Cupredoxins 152 344 IPR008972 -
Ssu9g0178 566 SUPERFAMILY Cupredoxins 24 168 IPR008972 -
Ssu9g0178 566 CDD CuRO_2_LCC_plant 159 305 IPR034285 -
Ssu9g0178 566 Gene3D - 16 144 IPR008972 -
Ssu9g0178 566 ProSitePatterns Multicopper oxidases signature 2. 528 539 IPR002355 GO:0005507
Ssu9g0178 566 Gene3D - 156 342 IPR008972 -
Ssu9g0178 566 Pfam Multicopper oxidase 160 308 IPR001117 -
Ssu9g0178 566 CDD CuRO_3_LCC_plant 410 548 IPR034289 GO:0005507
Ssu9g0178 566 Pfam Multicopper oxidase 424 547 IPR011706 GO:0005507|GO:0016491
Ssu9g0178 566 PANTHER MULTI-COPPER OXIDASE 22 565 IPR045087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0178 Ssu-Chr9 10979037 11025991 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0178 K05909 - gmx:100814128 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0178 9 10979037 11025991 Ssu9g0178 9 10979037 11025991 ECH
Ssu9g0178 9 10979037 11025991 Ssu7g0971 7 21140470 21172349 PCT