Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07181 ATGAGGATTTTGGTGGTATTTGCCGTTGTGTTGTGGATCCACTTTTGTCATGCTGAGCCATTCTCGGTGGATGGGAAGGTGTTGGTGCTCGATGAATCCAACTTCGATTCCGCCATATCCTCCTTCGATCACATCTTGGTTGACTTTTACGCTCCCTGGTGTGGCCACTGCAAGCGTCTCTCTCCCGAGTTAGATGCAGCAGCGCCTGTACTTGCAACCTTGAAGGAACCCATAATCATAGCAAAAGTAGATGCAGATAAGCATACCCGCCTTGCAAAAAAATATGATGTTGATGCATATCCAACCATTTTGCTGTTTAATCACGGCATACCCCAAGAATATCGTGGACCAAGGAAATCAGATTTGCTTGTTCGATATCTAAAGAAATTTGCTGCTTCTGATGTCAATGTTCTTGATTCAGATTCTGCTGTGAATAGTTTTGTTGAAGAAGCTGGCACTTTTTTTCCAATATATATAGGTTTTGGGTTGAACAGTTCAATAATAGAGAAGTTAGCCATAAAGTATAAGAAAAATGCATGGTTTTCTGTGGCAAAGGATTTTTCAGAGGATCTCATGGTATTGTATGACTTCGATAAGATTCCTGCACTGGTTTCCCTTAATCCACTATACAATGAGCGGAGCACATTCTATGGCCCCTTTGAAGAGGATTTTTTGGAAGATTTTGTGAAACAAAACCTGATTCCTTTGGCTGTGCCTGTATCCCATGACACACTTAAGTTGATGAAAGCTGATGGTAGGAAAATAGTTTTGACAATTATGGAGGATGAAGATGATGAAAATTCAAAGGAACTGATTAAGTTATTGAAGGCTGCTGCATCTGCAAATCGTGACTTAATATTTGGTTATGTTGGAGTTCAACAGCTGGAAGAATTTGCTGAAAAATTTGACATTGGGACTAAACTACCGAAAATGGTCGTTTGGAATAAAAGCGATGACTACCTTGCAGTTGATGGTTCAGAAAGCATTGAGGGGGAGGATCAGGCAACTCAAATTACTAAATTTCTTGAAGGATACAGAGAAGGAAGAACCATACAGAAAACATTTAGTGGGCCTTCTCTGATGCGTTTTATCCATCGATCTTTTGACATTAGAATGGTGTACATCTTAGTTTTTGTGATTGCAGTTCTGATGCTTATTCAAGGCCTTGGTAAAGGAGGTGATGAATACCATAGAGTACCAAATCAAGATCAGGTTGATCATGCAAGCAGCAGCTCTACTTCACAAGTTGAAAGCAAAGAGGAGTATAAACCAGGAGACAAGGAAGACTAA 1290 0.4016 MRILVVFAVVLWIHFCHAEPFSVDGKVLVLDESNFDSAISSFDHILVDFYAPWCGHCKRLSPELDAAAPVLATLKEPIIIAKVDADKHTRLAKKYDVDAYPTILLFNHGIPQEYRGPRKSDLLVRYLKKFAASDVNVLDSDSAVNSFVEEAGTFFPIYIGFGLNSSIIEKLAIKYKKNAWFSVAKDFSEDLMVLYDFDKIPALVSLNPLYNERSTFYGPFEEDFLEDFVKQNLIPLAVPVSHDTLKLMKADGRKIVLTIMEDEDDENSKELIKLLKAAASANRDLIFGYVGVQQLEEFAEKFDIGTKLPKMVVWNKSDDYLAVDGSESIEGEDQATQITKFLEGYREGRTIQKTFSGPSLMRFIHRSFDIRMVYILVFVIAVLMLIQGLGKGGDEYHRVPNQDQVDHASSSSTSQVESKEEYKPGDKED. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07181 429 MobiDBLite consensus disorder prediction 397 429 - -
Seca8g07181 429 ProSiteProfiles Thioredoxin domain profile. 9 132 IPR013766 -
Seca8g07181 429 Pfam Thioredoxin-like domain 170 330 - -
Seca8g07181 429 Pfam Thioredoxin 27 129 IPR013766 -
Seca8g07181 429 SUPERFAMILY Thioredoxin-like 232 355 IPR036249 -
Seca8g07181 429 CDD PDI_a_family 28 127 - -
Seca8g07181 429 ProSitePatterns Thioredoxin family active site. 46 64 IPR017937 -
Seca8g07181 429 SUPERFAMILY Thioredoxin-like 167 244 IPR036249 -
Seca8g07181 429 PANTHER PROTEIN DISULFIDE ISOMERASE 6 353 - -
Seca8g07181 429 MobiDBLite consensus disorder prediction 403 418 - -
Seca8g07181 429 FunFam Protein disulfide-isomerase 5-2 16 131 - -
Seca8g07181 429 Gene3D Glutaredoxin 18 141 - -
Seca8g07181 429 SUPERFAMILY Thioredoxin-like 19 130 IPR036249 -
Seca8g07181 429 Gene3D Glutaredoxin 222 359 - -
Seca8g07181 429 PRINTS Thioredoxin family signature 53 62 - -
Seca8g07181 429 PRINTS Thioredoxin family signature 45 53 - -
Seca8g07181 429 PRINTS Thioredoxin family signature 96 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07181 Seca-Chr8 168050924 168056954 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07181 K09580 - gmx:100791778 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07181 8 168050924 168056954 Seca8g07181 8 168050924 168056954 ECH