Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1645 ATGGCGATGGAGAAGATGGAAGTGATGTTAAGGTTTTTAGGGTTGCTGTTGATGTTGCTGAATGAGCTGCTATACTGCATGGCAGAAGGCAACATAAATTACTATGACTTTCTTCTACAAGACTCTAACTTTACGAGGCTGTGTAGCACAAAGAGCATGTTGACTGTAAATGGAAGTTTTCCTGGGCCGGTGCTTCGTGCCTACAGAGGTGACACGGTGTATGTGAATGTTCACAATCAAGGAGAGTATAATATAACCATTCATTGGCATGGAGTGAAGCAACCAAGAAATCCATGGGCAGATGGTCCAGAGTACATCACACAGTGCCCAATCCAACCAGGATCAAACTTCACTTACGAAATCATATTTTCCACAGAAGAAGGAACTCTGTGGTGGCATGCTCATAGTGATTGGTCACGTGCCACCATCCATGGTGCCATTATTGTTTTACCTAGAAAAGGAACTTCCTACCCTTTTCCTGAACCTGATGAAGAAGAAACAATAATATTTTCATCATGGTTCAAGGGGGATGTTATGAAGATGTACAATGAGGCTGTAGTAACAGGAGTACCAAAACTATCAGATGCTTTTACCATCAATGGTCAACCAGGAGATCTATATCCATGCTCTAATGAAACCACATATCGTCTGCTGGTTCAATATGGCAAGACCTATCTTCTCCGCATTGTCAATGCCATCCTAAATGAAGAGCTCTTCTTCTCAGTAGCAGAACATAACCTAACAATTGTGGGAACTGATGGGGCATATATCAAACCTGTAATCACCAATTACATCATGATAATCCCAGGGCAAACCCTGGATGTCCTAGTTACTGCAAATCAGCCTCCTAGTAACTATTACATGGCTGCCAGGGCTTTTGTCAGTGGTACATTTTCCTTCCACAATGGCACCACCACAGGGATTTTCCAATACACCAACTGTTGTAGTCTTCCACTATCTATTCTCCAGTACACAAGCTGCTGTAGTCCTCGACTGTCACCTTCCTTTCCAAACCTTCCAAGTTACAAAGACAGCGCTGCTGCATTAACCTTCACAAAGAGCCTCAGGAGCTTGGCGAACCAAGACTACCCCGTATATGTTCCACAAAACATCAATACCCAAATCATTATGACAGTTTCTTTAAATTTATTGCCTACTCCTGAAGCCTCATGTGCAAGGGTAGTTGGAAATAGGTGTTCTGGAGGCTTGAACAACATAAGTTGGGTCATGCCATCTACTGCTATACTGCAAACCTATTACAGGTATTCTCTCTTTTTCCACTTCTAA 1287 0.4258 MAMEKMEVMLRFLGLLLMLLNELLYCMAEGNINYYDFLLQDSNFTRLCSTKSMLTVNGSFPGPVLRAYRGDTVYVNVHNQGEYNITIHWHGVKQPRNPWADGPEYITQCPIQPGSNFTYEIIFSTEEGTLWWHAHSDWSRATIHGAIIVLPRKGTSYPFPEPDEEETIIFSSWFKGDVMKMYNEAVVTGVPKLSDAFTINGQPGDLYPCSNETTYRLLVQYGKTYLLRIVNAILNEELFFSVAEHNLTIVGTDGAYIKPVITNYIMIIPGQTLDVLVTANQPPSNYYMAARAFVSGTFSFHNGTTTGIFQYTNCCSLPLSILQYTSCCSPRLSPSFPNLPSYKDSAAALTFTKSLRSLANQDYPVYVPQNINTQIIMTVSLNLLPTPEASCARVVGNRCSGGLNNISWVMPSTAILQTYYRYSLFFHF* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1645 428 Pfam Multicopper oxidase 40 153 IPR011707 GO:0005507
Vvi18g1645 428 SUPERFAMILY Cupredoxins 159 359 IPR008972 -
Vvi18g1645 428 SUPERFAMILY Cupredoxins 27 174 IPR008972 -
Vvi18g1645 428 Gene3D - 34 164 IPR008972 -
Vvi18g1645 428 Gene3D - 165 323 IPR008972 -
Vvi18g1645 428 Pfam Multicopper oxidase 165 313 IPR001117 -
Vvi18g1645 428 CDD CuRO_1_LCC_plant 35 151 IPR034288 GO:0005507
Vvi18g1645 428 PANTHER MULTI-COPPER OXIDASE 37 420 IPR045087 -
Vvi18g1645 428 CDD CuRO_2_LCC_plant 166 311 IPR034285 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1645 Vvi-Chr18 21551484 21565320 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1645 K05909 - vvi:100264682 855.514