Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1641 ATGCTGGACTTTAGGAAATCTCTCCCTGCATTTAGAGAGAAGGAAAGGTTGCTCCAGGCAATTGCACGAAACCAGGTTGTTGTGGTTTCTGGGGAGACTGGATGTGGTAAGACGACTCAACTTCCTCAATACATATTGGAGTCGGAAATTGAATCTGGTCGTGGAGCATTCTGTAGCATAATTTGTACTCAGCCTCGAAGAATATCTGCTATGTCTGTTTCTGAAAGGGTGTCTACAGAGAGAGGAGAGCCTCTGGGTGAATCAGTTGGCTATAAAGTTCGATTGGAGGGAATGAAAGGAAAAAATACCCATCTACTTTTCTGTACCAGTGGTATTTTGCTTCGAAGGTTGTTGAGTGACCGCAACCTGAATGGTATAACCCATGTTTTTGTTGATGAAATTCATGAGCGAGGCATGAATGAAGATTTCCTATTGATTGTGTTGAAGGACCTTCTCCCACGTCGTCGGGATTTGAGATTGATTTTAATGAGTGCTACTCTTAATGCTGAGCTCTTTTCCAATTTTTTTGGTGGAGCACCAACAATTCACATTCCGGGCTTTACATATCCAGTGAGAGCCCACTTTCTGGAAGATGTGTTAGAAATGACAGGATATAAGTTGACTTCATTCAACCAAATTGATGATTATGGCCAAGAGAAAATGTGGAAGACTCAGAAGCAGCTAGTACCAAGGAAAAGGAAAAACAAGATCACTGCTCTTGTTGAGGATGCTCTTACTAAGTCAAGCTTTGAGAATTATAGCTCTGGAGTACGTGATTCGCTGTCATGTTGGACGCCTGATTGCATGGGATTTAATCTTATTGAGGCAGTTTTATGCCACATATGTCGGAAAGAACGGCCAGGTGCTGTGTTAGTATTCATGACAGGTTGGGAGGACATTAGTTGTTTGAGGGATCAAATTAGAGCTCATCCCCTCCTAGGGGATCCTAATAGAGTTCTGCTGCTTACGTGCCATGGTTCAATGGCAACTTCTGAACAGAAACTCATATTTGAGAAGCCGCCTCCTAATGTACGTAAGATAGTTCTTGCAACAAATATGGCAGAAGCAAGCATTACAATCAATGATGTAGTTTTTGTTGTTGACTGTGGGAAAGCAAAAGAAACCACCTATGATGCCTTGAATAATACCCCTTGTCTACTGCCATCTTGGATATCACAAGCTTCTGCCCGACAAAGAAGAGGTAGGGCTGGTCGTGTGCAGCCAGGGGAATGTTACCACCTATACCCCTCATGTGTTTATGAAGCTTTTTCTGAATATCAACTTCCTGAACTGCTGAGAACTCCTTTGAATTCTCTATGCTTGCAAATAAAAAGTCTTCAGGTTGGGAGTATTGGAGAATTCTTATCAGCTGCACTGCAGCCACCAGAACCATTGGCTGTCCAAAATGCTGTTGATTTTCTGAAGATGATTGGAGCTTTGGATGAGAAGGAAAATCTTACAAATCTTGGTGAGTATTTATCAATGCTCCCAGTGGATCCCAAGCTTGGGAAAATGCTAATCATGGGCACTATCTTCCGTTGCTTTGATCCTATTCTAACAATTGTGGCTGGACTTAGTGTCAAGGATCCTTTCCTTTTGCCTCAAGACAAGAAGGATTTGGCAGGGACAGCAAAATCTAGATTCTCTGCAAAAGACTATAGTGACCACATGGCTCTTGTTCGTGCATATGAAGGATGGAAAGACGCAGAAAGAGAAGGATCAGCATATGAGTATTGCTGGAGGAATTTCCTCTCTGCCCAGACTCTTCAGGCTATCCATTCTCTTCGGAAACAGTTTAGCTTCATTCTAAAAGATGCTGGCTTACTAGATGCAGATGCAAACACCAATAATAGATTAAGTCATAACCAATCATTGGTTCGTGCAATCATATGCTCTGGTCTCTTCCCTGGCATAGCATCTGTTGTGCCAAGGGAAACGTCAATGTCTTTCAAAACAATGGATGACGGCCAAGTTTTACTATATGCAAATTCTGTGAATGCACGTTACCAGACAATTCCCTACCCTTGGCTTGTCTTTGGTGAAAAAGTGAAGGTCAATACAGTTTTTATACGGGATTCTACTGGGATATCTGATTCAATACTGATCCTTTTTGGTGGTACTCTGAGCCGTGGAGCAATGGCTGAGCATTTGAAAATGTTGGAGGGTTACATTGATTTCTTCATGGATCCTAGTTTGGCAGAGTGCTATTGGAAGCTTAAAGAGGAATTTGATAAGCTTTTACAAAAGAAACTTCAAAATCCTAGCTTGGACATCCACAAGGAAGGAAAGTACCTTATGCTTGGCATTCAGGAGCTGGTATCAGGAGATCAATGTGAAGGGAGATTTGTATTTGGGCGTGAAAGCAAGAAACCAAGGGAGCCTTGTGACAGCAACAGATTTACAAAAGATGGAACAAACCCAAAGAGCTTACTACAAACTCTTCTGATGCGAGCAGGGCATTCCCCTCCAAAATACAAAACAAAGCACCTCAAAACAAATGAATTCAGGGCACTGGTGGAGTTCAAGGGAATGCAGTTTGTGGGGAAGCCCAAGAAAAACAAGCAGCTCGCAGAGAGGGATGCAGCCATAGAGGCATTGGCCTGGTTGACTCACACATCTGACAACAGTCAGGGTGAATATGGCGAAGATGAGTCCCCTCCCGATGTCACTAACAACATGCTAAAAATTCTTGGAAAGCGCAGAAGATCAAAGCGTAGATGA 2721 0.4267 MLDFRKSLPAFREKERLLQAIARNQVVVVSGETGCGKTTQLPQYILESEIESGRGAFCSIICTQPRRISAMSVSERVSTERGEPLGESVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNFFGGAPTIHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQKQLVPRKRKNKITALVEDALTKSSFENYSSGVRDSLSCWTPDCMGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQIRAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNVRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPSCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLKMIGALDEKENLTNLGEYLSMLPVDPKLGKMLIMGTIFRCFDPILTIVAGLSVKDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKDAGLLDADANTNNRLSHNQSLVRAIICSGLFPGIASVVPRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGISDSILILFGGTLSRGAMAEHLKMLEGYIDFFMDPSLAECYWKLKEEFDKLLQKKLQNPSLDIHKEGKYLMLGIQELVSGDQCEGRFVFGRESKKPREPCDSNRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNSQGEYGEDESPPDVTNNMLKILGKRRRSKRR* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1641 906 Gene3D - 787 874 - -
Vvi18g1641 906 Pfam Double-stranded RNA binding motif 807 869 IPR014720 -
Vvi18g1641 906 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 18 185 IPR014001 -
Vvi18g1641 906 PANTHER ATP-DEPENDENT RNA HELICASE 1 744 - -
Vvi18g1641 906 SMART ha2_5 469 560 IPR007502 GO:0004386
Vvi18g1641 906 FunFam DExH-box ATP-dependent RNA helicase DExH3 1 186 - -
Vvi18g1641 906 CDD SF2_C_RHA 271 415 - -
Vvi18g1641 906 MobiDBLite consensus disorder prediction 874 906 - -
Vvi18g1641 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 575 IPR027417 -
Vvi18g1641 906 FunFam DEA(D/H)-box RNA helicase family protein 788 874 - -
Vvi18g1641 906 SMART DRBM_3 807 870 IPR014720 -
Vvi18g1641 906 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 273 447 IPR001650 -
Vvi18g1641 906 SUPERFAMILY dsRNA-binding domain-like 800 870 - -
Vvi18g1641 906 Gene3D - 1 186 IPR027417 -
Vvi18g1641 906 FunFam DExH-box ATP-dependent RNA helicase DExH3 269 425 - -
Vvi18g1641 906 Gene3D - 271 426 IPR027417 -
Vvi18g1641 906 SMART helicmild6 301 407 IPR001650 -
Vvi18g1641 906 SMART ultradead3 6 199 IPR014001 -
Vvi18g1641 906 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 626 707 IPR011709 -
Vvi18g1641 906 Gene3D - 449 550 - -
Vvi18g1641 906 Pfam Helicase associated domain (HA2) 470 543 IPR007502 GO:0004386
Vvi18g1641 906 CDD DEXHc_RHA-like 24 184 - -
Vvi18g1641 906 FunFam Putative ATP-dependent RNA helicase DHX36 449 554 - -
Vvi18g1641 906 Pfam Helicase conserved C-terminal domain 276 406 IPR001650 -
Vvi18g1641 906 Pfam DEAD/DEAH box helicase 17 169 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1641 Vvi-Chr18 21352756 21403928 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1641 K14442 - vvi:100251493 1793.09