Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0973 Acco11g1332 . . . Adu05g00178 . . . . . . . . . Alju09g1348 . . . Apr7g1819 . Arst5g00219 . Bach4g00932 . Bisa11g2043 . Bva08g01090 . . . . . Dere09g1314 . . . Enph13g1609 . Glsi05g1097 . . . . . . . . . . . . . . . . . . . . . . . . . Lele49g0871 Lele50g0904 Lele51g0888 Lele52g0885 . . . . . . . . Mepo5g01271 . . . Mibi12g1131 . . . Phac2g02104 . Phco4g00607 . . . Psa2g3199 Psa4g2581 Pste1g00344 . . . . . Pumo8g01504 . Pvu2g1363 . Rops1g01306 . Seca12g03263 . Spst2g01162 . . . . . . . Trre9g01696 . . . Vian10g01022 . Vifa1g05991 . Vimu7g03398 . Viun2g01525 . Vivi2g02497 . . .
Vvi2g0974 . . . . . . Aed6g0107 . Aev05g0203 . Ahy15g0164 . Aip05g00163 . . . . . Apr7g1820 . . . . . . . Bva08g01089 . . . Cca06g01051 . . . . . . . . . . Gma09g01965 . . . . . . . Lal16g0421 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g2021 . . . . . . . . . . . . . . . . . . . Vra11g0998 .
Vvi2g0975 Acco11g1331 . . . Adu05g00177 . Aed6g0105 . Aev05g0204 . Ahy15g0165 . Aip05g00164 . Alju09g1346 . . . . Apr3g0492 Arst5g00217 . Bach4g00933 . Bisa11g2044 . Bva08g01088 . . . Cca06g01053 . Dere09g1315 . . . Enph13g1610 . Glsi05g1096 . . Gma09g01966 . . . . . . . . . . . . . . . . . . Lapu2g00904 . . . Lele49g0872 Lele50g0905 Lele51g0889 Lele52g0886 . . . . . . . . Mepo5g01272 . . . Mibi12g1130 . . . . . Phco4g00606 . Prci10g1400 . Psa2g3201 . Pste1g00363 . . Pte12g00620 . . Pumo8g01501 . Pvu2g1364 . Rops1g01305 . Seca10g01240 . Spst2g01164 . Ssu2g2022 . . . . . . . . . Vian10g01026 . Vifa1g05989 . Vimu7g03400 . Viun2g01524 . Vivi2g02493 . Vra11g0995 .
Vvi2g0976 . . . . Adu05g00175 . . . . . . . . . . . . . . . Arst5g00215 . Bach4g00935 . . . . Bva11g01336 . . . . . . . . . . . . Gma01g00088 . . . Gso1g0084 . . . . Lal16g0420 . . . . . . . . . . Lapu2g00903 . . . . . . . . . . . . . . . Mepo5g01273 . Mesa17g01377 . . . . . Phac2g02106 . Phco4g00605 . . . . . Pste1g00365 . Pte14g00742 Pte12g00621 . . Pumo8g01500 . Pvu2g1365 . Rops1g01304 . Seca10g01242 . Spst2g01165 . . . . . . . Trre9g01697 . . . . . Vifa1g05988 . Vimu7g03401 . Viun2g01522 . Vivi2g02490 . . .
Vvi2g0977 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g2956 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0978 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0979 . . . . . . . . . . . . . . . . . . . Apr3g0491 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g2976 . Mal5g3143 . . . . . . . Mtr8g2242 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr4g4456 . . . Tsu04g02788 . . . . . . . . . . . .
Vvi2g0980 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0981 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0972 Chr2 13978828 13980485 -
Vvi Vvi2g0973 Chr2 13992547 13995807 -
Acco Acco11g1332 Chr11 27587550 27589008 +
Adu Adu05g00178 Chr05 1996826 2000040 +
Alju Alju09g1348 Chr09 37253946 37255395 +
Apr Apr7g1819 Chr7 25540385 25544455 -
Arst Arst5g00219 Chr5 2016534 2019811 +
Bach Bach4g00932 Chr4 6264732 6274263 +
Bisa Bisa11g2043 Chr11 43422509 43430319 -
Bva Bva08g01090 Chr08 5565979 5568065 +
Dere Dere09g1314 Chr09 17108092 17109817 -
Enph Enph13g1609 Chr13 21777300 21779286 -
Glsi Glsi05g1097 Chr05 60809216 60811574 +
Lele Lele49g0871 Chr49 5382196 5388058 -
Lele Lele50g0904 Chr50 5710216 5712082 -
Lele Lele51g0888 Chr51 5463388 5465321 -
Lele Lele52g0885 Chr52 5750422 5752346 -
Mepo Mepo5g01271 Chr5 12922670 12926015 -
Mibi Mibi12g1131 Chr12 26556830 26561336 +
Phac Phac2g02104 Chr2 22916749 22919185 -
Phco Phco4g00607 Chr4 4598514 4600324 +
Psa Psa2g3199 Chr2 366165981 366166385 -
Psa Psa4g2581 Chr4 206446700 206447997 +
Pste Pste1g00344 Chr1 1232747 1234422 -
Pumo Pumo8g01504 Chr8 49641807 49643810 +
Pvu Pvu2g1363 Chr2 26318920 26320817 -
Rops Rops1g01306 Chr1 29456054 29457725 +
Seca Seca12g03263 Chr12 67146023 67151954 +
Spst Spst2g01162 Chr2 10247877 10249347 -
Trre Trre9g01696 Chr9 15032923 15035333 -
Vian Vian10g01022 Chr10 11225821 11227709 -
Vifa Vifa1g05991 Chr1 938208804 938210763 +
Vimu Vimu7g03398 Chr7 28645977 28648313 -
Viun Viun2g01525 Chr2 25434981 25437026 +
Vivi Vivi2g02497 Chr2 114680677 114683271 +
Vvi Vvi2g0974 Chr2 14011405 14014310 -
Aed Aed6g0107 Chr6 1005840 1010399 +
Aev Aev05g0203 Chr05 1554937 1556192 +
Ahy Ahy15g0164 Chr15 1968318 1971111 +
Aip Aip05g00163 Chr05 1827847 1832186 -
Apr Apr7g1820 Chr7 25554695 25558007 +
Bva Bva08g01089 Chr08 5562138 5563636 +
Cca Cca06g01051 Chr06 24475971 24479407 -
Gma Gma09g01965 Chr09 45291152 45295718 -
Lal Lal16g0421 Chr16 2546844 2548800 +
Ssu Ssu2g2021 Chr2 73533756 73537463 -
Vra Vra11g0998 Chr11 8900021 8903385 +
Vvi Vvi2g0975 Chr2 14027888 14029455 -
Acco Acco11g1331 Chr11 27572797 27574354 +
Adu Adu05g00177 Chr05 1992201 1994728 +
Aed Aed6g0105 Chr6 987924 990560 -
Aev Aev05g0204 Chr05 1560808 1563583 +
Ahy Ahy15g0165 Chr15 1972935 1976342 +
Aip Aip05g00164 Chr05 1840421 1843023 +
Alju Alju09g1346 Chr09 37234612 37236174 +
Apr Apr3g0492 Chr3 10205357 10207202 -
Arst Arst5g00217 Chr5 2011812 2014483 +
Bach Bach4g00933 Chr4 6264814 6266681 +
Bisa Bisa11g2044 Chr11 43471341 43473759 +
Bva Bva08g01088 Chr08 5558847 5560124 -
Cca Cca06g01053 Chr06 24528411 24530559 +
Dere Dere09g1315 Chr09 17125640 17127662 +
Enph Enph13g1610 Chr13 21791196 21793959 +
Glsi Glsi05g1096 Chr05 60801431 60807269 -
Gma Gma09g01966 Chr09 45315608 45317080 +
Lapu Lapu2g00904 Chr2 8351937 8354845 -
Lele Lele49g0872 Chr49 5388323 5389329 +
Lele Lele50g0905 Chr50 5716244 5717912 +
Lele Lele51g0889 Chr51 5467437 5467898 +
Lele Lele52g0886 Chr52 5755600 5757192 +
Mepo Mepo5g01272 Chr5 12935488 12938234 -
Mibi Mibi12g1130 Chr12 26548281 26550164 +
Phco Phco4g00606 Chr4 4592215 4598073 -
Prci Prci10g1400 Chr10 9353507 9355816 +
Psa Psa2g3201 Chr2 366337039 366337973 -
Pste Pste1g00363 Chr1 1281708 1285275 +
Pte Pte12g00620 Chr12 5645078 5646615 +
Pumo Pumo8g01501 Chr8 49624927 49628552 -
Pvu Pvu2g1364 Chr2 26333918 26336781 +
Rops Rops1g01305 Chr1 29440240 29444607 -
Seca Seca10g01240 Chr10 12291929 12310879 +
Spst Spst2g01164 Chr2 10263749 10265340 +
Ssu Ssu2g2022 Chr2 73560464 73561900 +
Vian Vian10g01026 Chr10 11266458 11268640 +
Vifa Vifa1g05989 Chr1 937552977 937555263 +
Vimu Vimu7g03400 Chr7 28652833 28655523 +
Viun Viun2g01524 Chr2 25427776 25430259 -
Vivi Vivi2g02493 Chr2 114611240 114614349 +
Vra Vra11g0995 Chr11 8884798 8886487 -
Vvi Vvi2g0976 Chr2 14033145 14036544 -
Adu Adu05g00175 Chr05 1969444 1973511 +
Arst Arst5g00215 Chr5 1989086 1993230 +
Bach Bach4g00935 Chr4 6276443 6278715 -
Bva Bva11g01336 Chr11 13568187 13570053 +
Gma Gma01g00088 Chr01 966778 969285 -
Gso Gso1g0084 Chr1 965525 968558 -
Lal Lal16g0420 Chr16 2546844 2552210 -
Lapu Lapu2g00903 Chr2 8348397 8351502 +
Mepo Mepo5g01273 Chr5 12944732 12947833 -
Mesa Mesa17g01377 Chr17 17918798 17921849 -
Phac Phac2g02106 Chr2 22936599 22938980 -
Phco Phco4g00605 Chr4 4589392 4592080 +
Pste Pste1g00365 Chr1 1285950 1288845 -
Pte Pte14g00742 Chr14 28704048 28706471 +
Pte Pte12g00621 Chr12 5647887 5650764 -
Pumo Pumo8g01500 Chr8 49621037 49624254 +
Pvu Pvu2g1365 Chr2 26336787 26339659 -
Rops Rops1g01304 Chr1 29437394 29440113 +
Seca Seca10g01242 Chr10 12309727 12313865 -
Spst Spst2g01165 Chr2 10266201 10268516 -
Trre Trre9g01697 Chr9 15052545 15055420 -
Vifa Vifa1g05988 Chr1 937096413 937098210 +
Vimu Vimu7g03401 Chr7 28655988 28656809 -
Viun Viun2g01522 Chr2 25424810 25427555 +
Vivi Vivi2g02490 Chr2 114359399 114361654 +
Vvi Vvi2g0977 Chr2 14039267 14044163 +
Lja Lja4g2956 Chr4 54001435 54006235 +
Vvi Vvi2g0978 Chr2 14046432 14046563 +
Vvi Vvi2g0979 Chr2 14047004 14071547 -
Apr Apr3g0491 Chr3 10191928 10203674 +
Lja Lja4g2976 Chr4 54593745 54599257 +
Mal Mal5g3143 Chr5 91842137 91847858 +
Mtr Mtr8g2242 Chr8 32631335 32638970 +
Tpr Tpr4g4456 Chr4 52364631 52370720 -
Tsu Tsu04g02788 Chr04 32453407 32459601 -
Vvi Vvi2g0980 Chr2 14141250 14142162 -
Vvi Vvi2g0981 Chr2 14153438 14153959 -