Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2956 ATGAAACAGGAGGGTAGGCCACCACTAGGGCTTCAGATCCCGCTTACTGACAAAGGGAAACACACACCTCCGAGCCCAAAAGGTAGAAGACTTTTTGAAGAAGGTGACAAAGAGGAATCAGAAGAAAGGTATCTTGGAGGACAGAGGGGACCTATGACTACAACCGAAACACACACTGAGATCCAAAACACACTAACCCCAGATCCAACATATACTACCCACATGAGCCAAGACCTAGCATTAACTGAGAAAGAAATAGAGTTAAATGCCCTCCCACCAAACAACACTATTGAGCAAGTGCTGACGGAATCTTTGGGAAATTTCACCCTCCAAAGCAATGAATCCCCCATACCACATAAAAGCCAAGATCAAAGCGACCCCGTTCTTCCTGAAAAGTACTCAGAGCAGGGAGACATATACACTACACAAACAGGAAATGCCCCCCCAATACACAACATAGAGCCTGAATCACAAGGAGAAGAAGAATCCCCCCCCATACTACAAGACAAACCTACGCCCAACACCCTCAGACAGTGGAAACGCTTTGCCAGAACAACCCCCTCTGAAAGCCCTCCGCCACCTCAGCTACACTGGGTAAGAATATGGCAAGACAAGTGGCTTAGGAGCAAGCTAACTCCAAGACGAGTTCAAGAAGTGTCCCATGGACAGGGCCTTCACTGGGTGGCAGACCTCATCAACCCCGAGAGCAATACGTGGAAAACCCAACTGATTCAGAACACATTCCCCCCCTTTGAAGCGGAAAAAATTCTCCAGGTTCCTTTACCAATCCAAAAGAAGGAAGATGAATTGATGTGGCCATTCTCAAAATCTGGAAATTATTGTGTTCGCTCGGGACACCACCTGCTCCAAACCTCTAACCATGAAGCCTCCACATCCACAACCACAGAAGACCCTCTTTGGAAATCCCTTTGGAAGACACACGCCCATCCTAGATGCAAAGATCTAATCTGGAGAGCTATCCACGACGCTCTCCCTGTTAAACTGAGCCTAAAGAGAAGAAGGATCACAGAGGACACCATTTGCCCAGTCTGCGGGGACCATGAGGAATCTACAGCCCATGCTCTCCTATACTGCCCTGATGCTCGTAAAATCTGGTTCCTTTCCCCCCTTGGACTGCGTATTGATGAAGCCGAGAATTACTCTTTTAAGGAATGGATCAAGGAAGTGTTGCAGAATACCCCTAAAGAATTCCTCCCCTGGCTCTGCTCTATAGCCTGGGCAATCTGGAAAAGGCGCAATTTGTGGGTGTTTGAGATGAAGAGGACAGAACCGGACAAAGTGGTTTTCAACGCCTCCCTCATGCAAATGATCGAAGATCCAGAAAAGAAAGCAAACAAGCAAAGAAGTACCGCAACCTCGGTTTGGAAGGCACCTCCAAGTGGCTGGATGAAAGTCAATACAGACGCTTCCATTCGTGATCCAGGGGGAACGGGCTTCGGAATGATCATTAGAAACAACAATGGCATCTTGATTGCTGCAGCCACCAAATGGTCCTCACCTGTCAACACACCCCAAATATCGGAAGCCTTATGTCTAAGATGGGGAATCATGTTAGCTCGGGAGCAGGGGATCAATGACTTAGTGATGGAAACAGATTGCCTCCAACTCAAGCAAGCTTGGAACAGAACCAGACCTCACAACAACCACCTTGACATGATTGTCCAAGACTGCAAGGCTCTCTCTTCCTCCTTTAGGAACTTTGATGTAATACACTGCTGTAGAACAGCAAATGTAGTAGCTGATTTTCTTGCCCATATGGCCTTTGATTTCAAGGACAATTTGTGGAGGTTTACCAGCCCCCCTGGTACCACACAATTGATCCAACTAGATGCTGCCCAGTGTAATGTTCCAGAGGTTTCCTCCTCCGTTTGA 1893 0.4754 MKQEGRPPLGLQIPLTDKGKHTPPSPKGRRLFEEGDKEESEERYLGGQRGPMTTTETHTEIQNTLTPDPTYTTHMSQDLALTEKEIELNALPPNNTIEQVLTESLGNFTLQSNESPIPHKSQDQSDPVLPEKYSEQGDIYTTQTGNAPPIHNIEPESQGEEESPPILQDKPTPNTLRQWKRFARTTPSESPPPPQLHWVRIWQDKWLRSKLTPRRVQEVSHGQGLHWVADLINPESNTWKTQLIQNTFPPFEAEKILQVPLPIQKKEDELMWPFSKSGNYCVRSGHHLLQTSNHEASTSTTTEDPLWKSLWKTHAHPRCKDLIWRAIHDALPVKLSLKRRRITEDTICPVCGDHEESTAHALLYCPDARKIWFLSPLGLRIDEAENYSFKEWIKEVLQNTPKEFLPWLCSIAWAIWKRRNLWVFEMKRTEPDKVVFNASLMQMIEDPEKKANKQRSTATSVWKAPPSGWMKVNTDASIRDPGGTGFGMIIRNNNGILIAAATKWSSPVNTPQISEALCLRWGIMLAREQGINDLVMETDCLQLKQAWNRTRPHNNHLDMIVQDCKALSSSFRNFDVIHCCRTANVVADFLAHMAFDFKDNLWRFTSPPGTTQLIQLDAAQCNVPEVSSSV* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2956 630 PANTHER - 197 548 - -
Lja4g2956 630 MobiDBLite consensus disorder prediction 1 73 - -
Lja4g2956 630 MobiDBLite consensus disorder prediction 110 173 - -
Lja4g2956 630 SUPERFAMILY Ribonuclease H-like 468 597 IPR012337 -
Lja4g2956 630 MobiDBLite consensus disorder prediction 136 151 - -
Lja4g2956 630 Pfam zinc-binding in reverse transcriptase 295 372 IPR026960 -
Lja4g2956 630 MobiDBLite consensus disorder prediction 22 45 - -
Lja4g2956 630 MobiDBLite consensus disorder prediction 50 73 - -
Lja4g2956 630 Pfam Reverse transcriptase-like 473 594 IPR002156 GO:0003676|GO:0004523
Lja4g2956 630 CDD RNase_H_like 472 592 IPR044730 -
Lja4g2956 630 Gene3D - 468 596 IPR036397 GO:0003676
Lja4g2956 630 PANTHER - 197 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2956 Lja-Chr4 54001435 54006235 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2956 - - soe:110778326 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2956 4 54001435 54006235 Lja4g2956 4 54001435 54006235 ECH