Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4456 ATGGTGATGAACAGATACATCACTCTAACAAATTCCGTCAAAACCCTTTTCCGATTTCTTCAATCACCCCTTCAACTCCGTTCTATCACAACCCTACATTCATTCGTTTCCCGCGAACCAATTGCTCCTAATTTTCATAACTTCTATTATGGAAGCTTCAGGCACATGTCTTCTGCCCCAACGCGCGTTGACGAAGAAGCTTCTGTTGATAATCGCGTTCCAGCTACTATTATAACTGGTTTTCTTGGCTCTGGAAAGACTACTCTTCTGAATCATATTCTCACAGCCCAACATGGCAAGCGGATAGCTGTGATTGAAAATGAGTTTGGTGAGGTTGATATTGATGGATCATTGGTTGCTAGTCATTCTTCTGTGAGTGGTGAAAACATTGTCATGGTCAATAATGGCTGCCTATGCTGCACTGTGCGAGGAGATCTAGTTAAAATGCTGTTGGAGTTGGTTAGGAAAAAAAGAGACAAATTTGATCACATTGTTATTGAAACCACAGGTCTTGCTAAACCAGCCCCTGTTATTGAAACTTTTTTCACTGACGAACTAGTTTCTGAGTATGTTAAGCTGGATGGAGTTGTGACTTTAGTTGATTGCAAGCATGCCATGCAACATTTGAATGAGGTGAAACCAAGATTTGTGGTCAATGAGGCAGTTGAACAAGTTGCATATGCTGACCGAATCATTTTGAACAAGATAGATTTGGTTGCTGAATCTGAGTTAAATATATTGAACAAGAAAATAAAGCACATCAATGGAATGGCACAAATTAAGCAAGCTAAATTTGGATCTGTTGACATAGACTTTGTTCTGGGTGTGGGAGGATATGATCTTCACAGAATTGAATCTGAGGTAGATGGAGAATGTCCCTCTACGGCGAGCCACTCAGATGATTGTGGACATGGACACAAAGGGCATCATCATCATCATCACGATCACGTGCATGATTCTGCTGTCTCTAGTGTCAGCATTGTTGCGGAGGGAACTCTTGATCGTGATGAGGTTGAAGATTGGCTTGAGAGATTGGTTGAAGAAAAGGGAGAAGACCTGTACAGAATGAAAGGTGTCTTGTCAGTGGATGGTTCTGAACAACGATACGTGTTTCAGGGGGTGCATTCGATGTTGGATGACAGCCTAGGAAAAACATGGGAACCCCAAGAAAAGAGGATAAACAAGCTTGTGTTCATTGGAAGGAATTTGGATGAAACTGCTCTCAGAAAAGGCTTCAAAGGTTGTTTAGTCTAG 1254 0.4155 MVMNRYITLTNSVKTLFRFLQSPLQLRSITTLHSFVSREPIAPNFHNFYYGSFRHMSSAPTRVDEEASVDNRVPATIITGFLGSGKTTLLNHILTAQHGKRIAVIENEFGEVDIDGSLVASHSSVSGENIVMVNNGCLCCTVRGDLVKMLLELVRKKRDKFDHIVIETTGLAKPAPVIETFFTDELVSEYVKLDGVVTLVDCKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVAESELNILNKKIKHINGMAQIKQAKFGSVDIDFVLGVGGYDLHRIESEVDGECPSTASHSDDCGHGHKGHHHHHHDHVHDSAVSSVSIVAEGTLDRDEVEDWLERLVEEKGEDLYRMKGVLSVDGSEQRYVFQGVHSMLDDSLGKTWEPQEKRINKLVFIGRNLDETALRKGFKGCLV* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4456 417 Pfam Cobalamin synthesis protein cobW C-terminal domain 322 416 IPR011629 -
Tpr4g4456 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 258 IPR027417 -
Tpr4g4456 417 PANTHER OSJNBA0083N12.6 PROTEIN 45 417 - -
Tpr4g4456 417 Gene3D - 304 416 IPR036627 -
Tpr4g4456 417 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 322 416 - -
Tpr4g4456 417 Gene3D - 70 279 IPR027417 -
Tpr4g4456 417 PANTHER COBW-RELATED 45 417 - -
Tpr4g4456 417 SMART CobW_C_3 322 416 IPR011629 -
Tpr4g4456 417 MobiDBLite consensus disorder prediction 290 317 - -
Tpr4g4456 417 CDD CobW-like 74 277 - -
Tpr4g4456 417 Pfam CobW/HypB/UreG, nucleotide-binding domain 74 260 IPR003495 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4456 Tpr-Chr4 52364631 52370720 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4456 - - gmx:100788010 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4456 4 52364631 52370720 Tpr4g4456 4 52364631 52370720 ECH