Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02788 ATGAACAGATACATGACTCTAACAAATTCCGTCAAAACCCTTTTTCGATTTCTTCAATCACCCCTTCAACCCCGTTCTATCACAAATCTACAAACCTCCGTTTCCCGCGAACCAATAGCTCCTAATTTTCATAGCTCTTGTTATGGAAGCTTCAGGCACATGTCCTCTTCCACAACGCGCGTTGACGAAGAAGCTTCTGTTGATAATCGCGTTCCAGCTACTATTATAACTGGTTTTCTTGGCTCTGGAAAGACTACTCTTCTGAATCATATTCTCACATGCCAACATGGCAAGCGGATAGCTGTGATTGAAAATGAGTTTGGTGAGGTTGATATTGATGGATCGCTAGTTTCTAGTCATTCTTCCGTGAGTGGTGAAAACATTGTCATGGTCAATAATGGCTGCCTATGCTGCACTGTGCGAGGAGATCTAGTTAAAATGCTTTTGGAGTTGGTTAGGAAAAAAAGAGACAAATTTGATCACATTGTTATTGAAACCACAGGTCTTGCTAAACCAGCCCCTGTCATTGAAACTTTTTTCACCGACGAACTAGTTTCTAAGTATGTTAAGCTGGATGGAGTTGTAACTTTAGTTGATTGCAAGCATGCTATGCAACATTTGAATGAGGTGAAACCAAGATTTGTGGTCAATGAGGCAGTTGAACAAGTTGCATATGCTGACCGAATTATTTTGAACAAGATAGATTTGGTTACTGAATCTGAGTTAGATATATTGACCAAGAAAATAAAGCACATCAATGGAATGGCACAAATTAAGCAAGCTAAATTTGGATCTGCTGACATAGACTTTGTTCTGGGTGTGGGAGGATATGATCTTCAGAGAATTGAATCTGAGGTAGATGGAGAATGTCCCTCTACAGCGAGCCACTCAGATGATTGTGGACATGGACACAAAgggcatcatcatcatcatcacgaTCACGTGCATGATTCTGCTGTCTCTAGTGTCAGCATTGTTGCGGAGGGAACTCTTGATCGTGATGAGGTTGAAGATTGGCTTGAGAGATTGGTTGAAGAAAAGGGAGAAGACCTGTACAGAATGAAAGGTGTCTTGTCAGTGGATGGTTCTGAACAACGATACGTGTTTCAGGGGGTGCATTCCATGTTTGATGACAGCCCTGGAAAAACATGGGAACCCCAGGAAAAGAGGATAAACAAACTTGTGTTCATTGGAAGGAATTTGGATGAAACTGCTCTCAGAAAAGGCTTCAAAGGCTGTTTAGTCTAG 1248 0.4062 MNRYMTLTNSVKTLFRFLQSPLQPRSITNLQTSVSREPIAPNFHSSCYGSFRHMSSSTTRVDEEASVDNRVPATIITGFLGSGKTTLLNHILTCQHGKRIAVIENEFGEVDIDGSLVSSHSSVSGENIVMVNNGCLCCTVRGDLVKMLLELVRKKRDKFDHIVIETTGLAKPAPVIETFFTDELVSKYVKLDGVVTLVDCKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTESELDILTKKIKHINGMAQIKQAKFGSADIDFVLGVGGYDLQRIESEVDGECPSTASHSDDCGHGHKGHHHHHHDHVHDSAVSSVSIVAEGTLDRDEVEDWLERLVEEKGEDLYRMKGVLSVDGSEQRYVFQGVHSMFDDSPGKTWEPQEKRINKLVFIGRNLDETALRKGFKGCLV 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02788 415 PANTHER COBW-RELATED 48 415 - -
Tsu04g02788 415 SMART CobW_C_3 320 414 IPR011629 -
Tsu04g02788 415 Pfam Cobalamin synthesis protein cobW C-terminal domain 320 414 IPR011629 -
Tsu04g02788 415 PANTHER OSJNBA0083N12.6 PROTEIN 48 415 - -
Tsu04g02788 415 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 320 414 - -
Tsu04g02788 415 Gene3D - 68 277 IPR027417 -
Tsu04g02788 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 270 IPR027417 -
Tsu04g02788 415 CDD CobW-like 72 275 - -
Tsu04g02788 415 Gene3D - 302 414 IPR036627 -
Tsu04g02788 415 MobiDBLite consensus disorder prediction 288 319 - -
Tsu04g02788 415 Pfam CobW/HypB/UreG, nucleotide-binding domain 72 258 IPR003495 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02788 Tsu-Chr4 32453407 32459601 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02788 - - gmx:100788010 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02788 04 32453407 32459601 Tsu04g02788 04 32453407 32459601 ECH