Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0979 ATGGCCACCAGGTTGTTATCAAGAACAACAACCAAAAGCCTGTGCAAAACTCTCCACCATCACTTCCAGCACTCTTCTTCATGTCTCGTTCAGCTCCTCAGAAACGCTCATGTCCTTGGTTCTAGCCCATTTGATTCTACTAAGTTTCTTTATAGAAACTCCAGGGGTATGGTTTGTGCCCCAAATTACGATATTAGCTCTCTCAATCTCGACAATAGGGTTCCTGCCACTGTAATCACTGGTTTTCTCGGCTCTGGAAAGACCACTCTCTTGAATCATATTTTAACTTCACAACATGGAAAGCGGATTGCTGTCATAGAGAACGAGTTTGGCGAGGTGGATATTGATGGTTCATTGGTTGCTAGTCATTCCTCAGTGGCTGAAGACATTGTCATGGTTAATAATGGGTGTCTATGCTGTACCGTACGAGGAGATCTAGTGAAAATGCTCTTGGAATTGGTTAAGAAAAAGCGAGACAAATTTGATCATATTGTTATAGAAACCACAGGCCTTGCTAAACCGGCTCCTGTTATTGAAACATTTTGTACTGATGAGTTAGTTTCACGTTATGTGAAACTTGATGGAGTTGTTACTTTGGTCGATGCTAAGCATGCCATGCAACATTTAGATGAAGTAAAACCCAGATTTGTGGTGAATGAAGCAGTGGAACAAGTTGCTTATGCAGACCGTATCATTTTAAATAAGATTGATTTGGTGACTGAGGCTGACTTGGAGAGATTGACCCAGAGAATTAAGCATATCAATGGGATGGCTCAGATAAAGTTAGCTAAATTTGGATGTGTTGACATGGACTTTGTTTTGGGAGTGGGAGGATATGATCTTGAGAGAATTGATTCCGAGGTTCAGGTAGATAGCTCCCATTGTGCAACCCATCAACATGAAACCGGGAAAGGACACCATAAAGGACATCATCACGATCATGTGCATGATTCTGCTGTCTCCAGTGTCAGTATAGTTTCTGAAGGAACCCTTGACCTTGATGAGGTAGATGATTGGCTGGAAAGGCTTCTTGAAGAAAAAGGGGAAGACTTGTACAGGATGAAGGGGGTCCTGTGTGTGAATGGTTCTGATGAACGTTATGTTTTTCAGGGGGTGCATTCTACATTAGATGGCTGCCCAGGCAAAACATGGGAACCTGATGAGAAAAGGGTGAGCAAACTCGTATTTATAGGAAGGAACTTGGATGAAACTGCTCTAAGAAAAGGTTTCAGAGGTTGTCTAGTGTGA 1248 0.4231 MATRLLSRTTTKSLCKTLHHHFQHSSSCLVQLLRNAHVLGSSPFDSTKFLYRNSRGMVCAPNYDISSLNLDNRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDGSLVASHSSVAEDIVMVNNGCLCCTVRGDLVKMLLELVKKKRDKFDHIVIETTGLAKPAPVIETFCTDELVSRYVKLDGVVTLVDAKHAMQHLDEVKPRFVVNEAVEQVAYADRIILNKIDLVTEADLERLTQRIKHINGMAQIKLAKFGCVDMDFVLGVGGYDLERIDSEVQVDSSHCATHQHETGKGHHKGHHHDHVHDSAVSSVSIVSEGTLDLDEVDDWLERLLEEKGEDLYRMKGVLCVNGSDERYVFQGVHSTLDGCPGKTWEPDEKRVSKLVFIGRNLDETALRKGFRGCLV* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0979 415 Gene3D - 300 414 IPR036627 -
Vvi2g0979 415 CDD CobW-like 75 277 - -
Vvi2g0979 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 288 IPR027417 -
Vvi2g0979 415 SMART CobW_C_3 320 414 IPR011629 -
Vvi2g0979 415 Pfam CobW/HypB/UreG, nucleotide-binding domain 75 260 IPR003495 -
Vvi2g0979 415 Pfam Cobalamin synthesis protein cobW C-terminal domain 320 414 IPR011629 -
Vvi2g0979 415 FunFam GTP-binding protein YjiA 71 280 - -
Vvi2g0979 415 PANTHER COBW-RELATED 69 414 - -
Vvi2g0979 415 Gene3D - 71 279 IPR027417 -
Vvi2g0979 415 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 320 414 - -
Vvi2g0979 415 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0979 Vvi-Chr2 14047004 14071547 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0979 - - vvi:100265506 768.844