LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr3g0984	ATGGCTTCAAAAAGTAAATTCCTTCATATTTCATTGGCATTGGTTTTATGCATGGGATTGTGGGGTTTTCGAGTCACATCTCATACTCTTCAAGATGCCTCCATATATGAGATGCATCAACGATGGATGGTTCGTTTTGGCAAAATCTACGAAGACTCCCAAGAAGGAGAAAAACGCTTTAAGATATTTAAGGACAATGTGAATTACATTGAAGCTTTCAATGATGCTGCCAATAAACCTTACAAGCTTGGCATTAATCAATTTTCTGATCTCACCAATGAGGAGTTCATAGCATCAAGAAATGGATTCAAGGGGAACATGCTTTCCTCAACCAAAAGAACAACCTCTTTTAAGTATGAAAATGTGAGTGCAGTTCCATCCTCAATAGATTGGAGACAAAAAGGAGCAGTGACACCCATCAAGGACCAACACAGATGTTTATGTTGTTGGGCATTTTCTGCTGTAGCAGCAACGGAAGGACTCCACAAGTTGAGTACTGGAAATTTGATATCTTTATCTGAACAAGAACTTGTTGATTGTGATAATGTGGACCATGGTTGTGAGGGTGGTTTTATGGACAGTGCTTTCAAATTCATAATGCAAAATAATGGACTCAAAACTGAATCAAATTATCCCTATCAGGGTTTTGGTGGAACATGCAATGCAACTCAAGGCAACAAAGCAGCTACTATTAGTGGCTATGAGGATGTCCCTCCGAACAATGAGAAGGCACTGCAAAAAGCTGTGGCTAATCAACCAGTTTCTGTAGCCATTGATTCCAAAGGTTCTGATTTTCAATTTTACAGAAGTGGTGTTTTCAGTGGTTCATGTGGAACTCTGTTGGATCATGGTGTCACTGCGGTGGGTTATGGTGTTAGCGATGATGGAACTGAGTATTGGTTGATTAAGAATTCATGGGGAACCCAATGGGGTGAAGAAGGCTACATTAGGATGCAACGGAATGTGAATGCTCCCCAAGGAATGTGTGGCATTACAATGCTGGCATCTTACCCAACTGCATAA	1023	0.4047	MASKSKFLHISLALVLCMGLWGFRVTSHTLQDASIYEMHQRWMVRFGKIYEDSQEGEKRFKIFKDNVNYIEAFNDAANKPYKLGINQFSDLTNEEFIASRNGFKGNMLSSTKRTTSFKYENVSAVPSSIDWRQKGAVTPIKDQHRCLCCWAFSAVAATEGLHKLSTGNLISLSEQELVDCDNVDHGCEGGFMDSAFKFIMQNNGLKTESNYPYQGFGGTCNATQGNKAATISGYEDVPPNNEKALQKAVANQPVSVAIDSKGSDFQFYRSGVFSGSCGTLLDHGVTAVGYGVSDDGTEYWLIKNSWGTQWGEEGYIRMQRNVNAPQGMCGITMLASYPTA*	341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr3g0984	340	SMART	Inhibitor_I29_2	39	96	IPR013201	-
	Apr3g0984	340	Pfam	Cathepsin propeptide inhibitor domain (I29)	39	96	IPR013201	-
	Apr3g0984	340	ProSitePatterns	Eukaryotic thiol (cysteine) proteases histidine active site.	281	291	IPR025660	-
	Apr3g0984	340	ProSitePatterns	Eukaryotic thiol (cysteine) proteases asparagine active site.	299	318	IPR025661	-
	Apr3g0984	340	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	23	339	-	-
	Apr3g0984	340	SMART	pept_c1	125	339	IPR000668	GO:0006508\|GO:0008234
	Apr3g0984	340	PANTHER	-	23	339	-	-
	Apr3g0984	340	Gene3D	Cysteine proteinases	23	340	-	-
	Apr3g0984	340	PRINTS	Papain cysteine protease (C1) family signature	143	158	IPR000668	GO:0006508\|GO:0008234
	Apr3g0984	340	PRINTS	Papain cysteine protease (C1) family signature	283	293	IPR000668	GO:0006508\|GO:0008234
	Apr3g0984	340	PRINTS	Papain cysteine protease (C1) family signature	299	305	IPR000668	GO:0006508\|GO:0008234
	Apr3g0984	340	CDD	Peptidase_C1A	126	338	IPR039417	-
	Apr3g0984	340	Pfam	Papain family cysteine protease	125	338	IPR000668	GO:0006508\|GO:0008234
	Apr3g0984	340	SUPERFAMILY	Cysteine proteinases	32	339	IPR038765	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr3g0984	Apr-Chr3	24712253	24713362	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr3g0984	-		K16292	gmx:100791826	544.658

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr3g0984	3	24712253	24713362	Apr3g0984	3	24712253	24713362	ECH