LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g1311	ATGGCTTCCACCACCCAAAAACAATACATTTTAGCTCTATTCCTTCTCCTTGCAGTTGGCATTTCCCAAGTGATGTCCCGCAAGCTGCATGAGACATCCTTGAGAGAAAGACATGAAAACTGGATGCAAGAATATGGCAAAGTGTATAAGGACGCTGCAGAGAAGGAAAAACGTTTCCTCATATTCAAGGACAATGTGGAGTTCATTGAATCGTTCAATGCTGTTGGCAACAAACCCTACAAGCTTGGGGTTAATCACTTTGCTGACCTCACAGTTCAGGAATTCAAGGCTTCCCGTAATGGATTCAAGAGGCCTCACGAGTTTAGCACAACACCATTTAAGTATGAAAATGTGACTGCTATTCCTGCAGCCATAGACTGGAGGAAAAAAGGAGCTGTTACTCCAATAAAAAACCAAGGGAGCTGTTGGGCTTTTTCAACTGTGGCTGCAACTGAAGGTATCCACCAAATAGCCACAGGCAAACTAGTATCCCTCTCAGAGCAAGAGCTAGTGGACTGTGACACAAAAGGTGTAGACCAAGGGTGTGAAGGGGGTTACATGGAAGATGGGTTTGAATTCATTATAAAAAATGGTGGAATCAGCAGTGAGGCAAACTACCCCTACAAGGCAGCTGATGGCAGTTGCAAGAAAGGAACCTCCCCAGTGGCTCAAATTAAGGGGTATGAGAAGGTTCCTCCAAATAGTGAGAAGGCACTGCAGAAAGCTGTAGCTAACCAACCAGTGTCAGTTTCTATCAATGCAGATGGTTCTGGTTTCATGTTTTACTCTAGTGGAATTTACTCTGGAGAATGTGGAACTGAACTAGACCATGGTGTTACTGCAGTGGGTTATGGCATTGCTAATGGAACTGAGTATTGGTTAGTGAAGAATTCATGGGGCACACAATGGGGTGAGGAAGGATATGTGAGGATGAAGAGAGGTATTGCTGCCAAGCATGGTTTATGTGGAATTGCCTTGGATTCATCTTATCCAACTGCATGA	1002	0.4421	MASTTQKQYILALFLLLAVGISQVMSRKLHETSLRERHENWMQEYGKVYKDAAEKEKRFLIFKDNVEFIESFNAVGNKPYKLGVNHFADLTVQEFKASRNGFKRPHEFSTTPFKYENVTAIPAAIDWRKKGAVTPIKNQGSCWAFSTVAATEGIHQIATGKLVSLSEQELVDCDTKGVDQGCEGGYMEDGFEFIIKNGGISSEANYPYKAADGSCKKGTSPVAQIKGYEKVPPNSEKALQKAVANQPVSVSINADGSGFMFYSSGIYSGECGTELDHGVTAVGYGIANGTEYWLVKNSWGTQWGEEGYVRMKRGIAAKHGLCGIALDSSYPTA*	334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g1311	333	ProSitePatterns	Eukaryotic thiol (cysteine) proteases asparagine active site.	292	311	IPR025661	-
	Pvu11g1311	333	SUPERFAMILY	Cysteine proteinases	30	332	IPR038765	-
	Pvu11g1311	333	SMART	Inhibitor_I29_2	38	95	IPR013201	-
	Pvu11g1311	333	CDD	Peptidase_C1A	122	331	IPR039417	-
	Pvu11g1311	333	ProSitePatterns	Eukaryotic thiol (cysteine) proteases histidine active site.	275	285	IPR025660	-
	Pvu11g1311	333	Gene3D	Cysteine proteinases	18	333	-	-
	Pvu11g1311	333	PRINTS	Papain cysteine protease (C1) family signature	136	151	IPR000668	GO:0006508\|GO:0008234
	Pvu11g1311	333	PRINTS	Papain cysteine protease (C1) family signature	277	287	IPR000668	GO:0006508\|GO:0008234
	Pvu11g1311	333	PRINTS	Papain cysteine protease (C1) family signature	292	298	IPR000668	GO:0006508\|GO:0008234
	Pvu11g1311	333	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	25	332	-	-
	Pvu11g1311	333	SMART	pept_c1	121	332	IPR000668	GO:0006508\|GO:0008234
	Pvu11g1311	333	Pfam	Papain family cysteine protease	121	331	IPR000668	GO:0006508\|GO:0008234
	Pvu11g1311	333	PANTHER	SENESCENCE-ASSOCIATED GENE 12	25	332	-	-
	Pvu11g1311	333	Pfam	Cathepsin propeptide inhibitor domain (I29)	38	95	IPR013201	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g1311	Pvu-Chr11	27415356	27416876	Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g1311	-		-	gmx:100802616	616.69

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu11g1311	11	27415356	27416876	Pvu11g1311	11	27415356	27416876	ECH