Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco13g0533 ATGTCAAGCATTATGGAAATGAAGAAGCTCTTGTTGGTTTCCCTATCACTAGCCTTGGTTCTCAAAGTGTCTGAGAGCTTTGATTTTCATGAGAAAGATTTATCGTCGGAGGATAGCTTGTGGGATTTGTACGAGAGGTGGAGGAGCCACCACACATTGTCTCGGAGCCTTGATGAGAAGAAGAAGCGATTTAATGTGTTCAAAGCCAATGCCATGCATGTTCACAACACAAACAAGATGGACAAGCCGTACAAGCTCAAACTCAACAAGTTCGCTGACATGACCAACCATGAATTCAGGAGTTTCTTTGCTGGATCAAAGGTTAATCACCACAGAATGTTCCGAGGCACACCACGTGGCATCGGAACATTCATGTACGAGAATGTTGGTCGGGTTCCTCCTTCTGTTGATTGGAGGCAGAAAGGTGCTGTCACTCCAGTCAAAAATCAAGGCCAATGTGGTAGCTGTTGGGCGTTTTCTACAGTTGTAGCAGTTGAAGGAATTAATCAAATCAAGACAAAGAAGTTAGTGTCCTTATCTGAGCAAGAGTTAGTAGACTGTGACACTGAAGAGAACCAAGGATGCAACGGTGGATTAATGGAATATGCCTTTGAGTACATCAAGAAAAAAGGTGGCCTAGCGACAGAAAAAGATTACCCTTACCTTGCCCAAGAAGGAACTTGTGACGCATCAAAGGAGAATGACATTATAGTTTCCATTGATGGACATGAGAATGTACCTGCTAATGACGAGGATGCTCTGATCAAAGCTGTGGCCAACCAACCTGTATCTGTAGCCATTGATGCTGGAGGTTATGATTTCCAATTCTACTCAGAGGGAGTATTTAGTGGAGATTGTACAACAGAGTTGAATCATGGGGTAGCAGTCGTGGGGTACGGAACGACAGTGGATGGAACAAAGTATTGGATAGTGAAGAACTCATGGGGGCCAGAATGGGGAGAAGGAGGATACATAAGGATGGAACGGGGAGTCTCAGAAAAGGAAGGACTGTGTGGCATAGCAATGGAGGCTTCTTACCCTGTCAAAAACTCTACCTCTAACCCTTCACCACGTTCATCTTCTCATAAAGATGAGCTCTAA 1101 0.4432 MSSIMEMKKLLLVSLSLALVLKVSESFDFHEKDLSSEDSLWDLYERWRSHHTLSRSLDEKKKRFNVFKANAMHVHNTNKMDKPYKLKLNKFADMTNHEFRSFFAGSKVNHHRMFRGTPRGIGTFMYENVGRVPPSVDWRQKGAVTPVKNQGQCGSCWAFSTVVAVEGINQIKTKKLVSLSEQELVDCDTEENQGCNGGLMEYAFEYIKKKGGLATEKDYPYLAQEGTCDASKENDIIVSIDGHENVPANDEDALIKAVANQPVSVAIDAGGYDFQFYSEGVFSGDCTTELNHGVAVVGYGTTVDGTKYWIVKNSWGPEWGEGGYIRMERGVSEKEGLCGIAMEASYPVKNSTSNPSPRSSSHKDEL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco13g0533 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 308 327 IPR025661 -
Acco13g0533 366 Gene3D Cysteine proteinases 16 350 - -
Acco13g0533 366 SUPERFAMILY Cysteine proteinases 37 348 IPR038765 -
Acco13g0533 366 MobiDBLite consensus disorder prediction 347 366 - -
Acco13g0533 366 SMART pept_c1 132 348 IPR000668 GO:0006508|GO:0008234
Acco13g0533 366 PRINTS Papain cysteine protease (C1) family signature 150 165 IPR000668 GO:0006508|GO:0008234
Acco13g0533 366 PRINTS Papain cysteine protease (C1) family signature 292 302 IPR000668 GO:0006508|GO:0008234
Acco13g0533 366 PRINTS Papain cysteine protease (C1) family signature 308 314 IPR000668 GO:0006508|GO:0008234
Acco13g0533 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 150 161 IPR000169 -
Acco13g0533 366 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 35 347 IPR013128 GO:0008234
Acco13g0533 366 SMART Inhibitor_I29_2 44 99 IPR013201 -
Acco13g0533 366 FunFam Senescence-specific cysteine protease SAG39 24 349 - -
Acco13g0533 366 Pfam Papain family cysteine protease 132 348 IPR000668 GO:0006508|GO:0008234
Acco13g0533 366 CDD Peptidase_C1A 133 347 IPR039417 -
Acco13g0533 366 Pfam Cathepsin propeptide inhibitor domain (I29) 44 99 IPR013201 -
Acco13g0533 366 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 290 300 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco13g0533 Acco-ChrAcco13 3852371 3853768 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco04g2482 04 41613197 41615881 Acco13g0533 13 3852371 3853768 CCT
Acco13g0533 13 3852371 3853768 Acco13g0533 13 3852371 3853768 ECH