Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01191 ATGACTTCCATGGGGAAAAACCAGAATGTTTTGTCTCTACTTCTCCTTCTCTCAATTTTCACTTCCCAAGTAATGTCCCGCAACATCAATGAGGCATCCATGTCCCAAAGACATGAGCAGTGGATGAAAAAATATGGTAAAACATATAAGAATGCTGCAGAGAAGCAAAAACGTTTCCTCATATTCAAGGATAATGTTCAATTCATTGAATCCTTCAATGCTGCTGGCAACAAACATTACAAGCTTGGCATCAATCACCTAGCTGACCAAACCAACGAAGAATTTATTGCTTCCCACACTGGATACAAGGGATCTCATAAGTTGAAAGAAACAGCACAAACGTCATTTAAGTATGAAAACGTTACTCTTATTCCTACTGCAGTGGATTGGAGGCAAAATGGAGCTGTTACTCAAATCAAGGACCAAGGCCAATGTGGTTGCTGCTGGGCATTTTCAACAGTTGCTGCAACAGAAGGTATCTACCAGATAACTACAGGTAAGTTAGTGTCCCTCTCAGAGCAAGAGTTAGTGGATTGTGACAGTGTGGATCAAGGATGTGATGGAGGTCTCATGGAAGATGGTTTCGAATTCATTTTAAAAAACGGTGGAATCACCAGTGAGGCTAACTACCCCTACACTGGAGTTAATGGAACTTGTGACACAAAGAAAGAGGCTTCTCCTGAAGCTCAAATAAAAGGGTATGAAACAGTACCTCCAAATAGTGAGGACGCACTGCAGAAAGCTGTTGCAAACCAACCAGTGTCAGTTAGCATTGATGCTGGAGGATCTGCTTTCCAATTTTACAAAACTGGTGTTTTCACTGGACAATGCGGAACTCAACTAGACCATGGTGTTACTGCTGTTGGCTATGGTATCACTGATAATGGTACTGAGTTTTGGATAGTAAAGAATTCATGGGGCACAGAATGGGGTGAACAAGGATACATAAGAATGGAACGAGGCATAGACGCTAAAGAAGGCCTTTGTGGCATTGCCATGGATGCTTCATACCCAATTGCTTGA 1023 0.4194 MTSMGKNQNVLSLLLLLSIFTSQVMSRNINEASMSQRHEQWMKKYGKTYKNAAEKQKRFLIFKDNVQFIESFNAAGNKHYKLGINHLADQTNEEFIASHTGYKGSHKLKETAQTSFKYENVTLIPTAVDWRQNGAVTQIKDQGQCGCCWAFSTVAATEGIYQITTGKLVSLSEQELVDCDSVDQGCDGGLMEDGFEFILKNGGITSEANYPYTGVNGTCDTKKEASPEAQIKGYETVPPNSEDALQKAVANQPVSVSIDAGGSAFQFYKTGVFTGQCGTQLDHGVTAVGYGITDNGTEFWIVKNSWGTEWGEQGYIRMERGIDAKEGLCGIAMDASYPIA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01191 340 SUPERFAMILY Cysteine proteinases 31 339 IPR038765 -
Vimu5g01191 340 FunFam Senescence-specific cysteine protease SAG39 19 340 - -
Vimu5g01191 340 Gene3D Cysteine proteinases 20 340 - -
Vimu5g01191 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 299 318 IPR025661 -
Vimu5g01191 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 281 291 IPR025660 -
Vimu5g01191 340 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 27 333 IPR013128 GO:0008234
Vimu5g01191 340 CDD Peptidase_C1A 125 338 IPR039417 -
Vimu5g01191 340 Pfam Cathepsin propeptide inhibitor domain (I29) 38 95 IPR013201 -
Vimu5g01191 340 PRINTS Papain cysteine protease (C1) family signature 299 305 IPR000668 GO:0006508|GO:0008234
Vimu5g01191 340 PRINTS Papain cysteine protease (C1) family signature 142 157 IPR000668 GO:0006508|GO:0008234
Vimu5g01191 340 PRINTS Papain cysteine protease (C1) family signature 283 293 IPR000668 GO:0006508|GO:0008234
Vimu5g01191 340 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 142 153 IPR000169 -
Vimu5g01191 340 SMART pept_c1 124 339 IPR000668 GO:0006508|GO:0008234
Vimu5g01191 340 Pfam Papain family cysteine protease 124 339 IPR000668 GO:0006508|GO:0008234
Vimu5g01191 340 SMART Inhibitor_I29_2 38 95 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01191 Vimu-Chr5 20546403 20547525 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01191 - - gmx:100807398 574.318