Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1367 ATGAAGAAGCTATTGTGGGTTGCTCTATCATTTGCATTGGTTCTCGGAGTCTCCGAGAGCTTTGATTTCCACGAGAAGGATTTGGCATCGGAGGAAAGCTTGTGGGAGTTGTACGAGAGATGGAGGAGCCACCACACGGTTTCTCGAAGCCTGAATGAGAAGCACACGCGGTTCAATGTGTTCAAAGCCAATATCATGCATGTCCACAACACAAACAAATTGGATAAACCTTACAAGCTAAAACTCAACAAGTTCGCTGACATGACCAACCATGAATTTCAGAGTGCCTATGCTGGCTCCAAGGTTAATCACCACAGAATGTTCCGAGGCACCCCCCGTGGGAATGGAATCTTCATGTATCAAAACGTTGAGAGAGTTCCCCCTTCTGTTGATTGGAGGAAGAAAGGTGCCGTCACTGCTGTCAAGAATCAAGGCCAATGTGGTAGTTGCTGGGCGTTTTCGACGGTTGCGGCTGTTGAAGGTATTAATCAGATCAAGACACGTAAGCTAGTGTCCTTGTCTGAGCAAGAGTTAATAGACTGCAATAATGGGGAAAATCAAGGATGCAATGGTGGGCTAATGGAATATGCTCTTGAGTTCATCAAGCAAAGGGGTGGCATAACAACAGAAAGCAATTACCCTTATAGAGCTGAAGATGGAACCTGCGACAAACCGAAGGAAAATGACCTGGTAGTGTCCATTGATGGCCATGAGAATGTCCCCGCTAACGATGAGGATGCTTTGCTCAAAGCTGTAGCCAACCAACCTGTATCTGTAGCCATAGATGCTGGGGGCTATGATTTCCAGTTCTACTCAGAGGGAGTATTTACGGGAGACTGTGGCACGGAGCTGAATCATGGAGTGGCGACTGTGGGGTACGGAACAACCATTGATGGAACCAAATATTGGATAGTGAAGAACTCTTGGGGACCCGAATGGGGAGAACAAGGTTACATCAGGATGCAGAGGGGGATATCACACAAGGAGGGACTGTGTGGCATAGCAATGGAGGCTTCCTACCCTGTGAAAAAGACTTCCACTAACCCAACAACACCTTCATCGTCTCCTAAAGACGAGCTCTGA 1083 0.4728 MKKLLWVALSFALVLGVSESFDFHEKDLASEESLWELYERWRSHHTVSRSLNEKHTRFNVFKANIMHVHNTNKLDKPYKLKLNKFADMTNHEFQSAYAGSKVNHHRMFRGTPRGNGIFMYQNVERVPPSVDWRKKGAVTAVKNQGQCGSCWAFSTVAAVEGINQIKTRKLVSLSEQELIDCNNGENQGCNGGLMEYALEFIKQRGGITTESNYPYRAEDGTCDKPKENDLVVSIDGHENVPANDEDALLKAVANQPVSVAIDAGGYDFQFYSEGVFTGDCGTELNHGVATVGYGTTIDGTKYWIVKNSWGPEWGEQGYIRMQRGISHKEGLCGIAMEASYPVKKTSTNPTTPSSSPKDEL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1367 360 Pfam Papain family cysteine protease 126 342 IPR000668 GO:0006508|GO:0008234
Glsi13g1367 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 144 155 IPR000169 -
Glsi13g1367 360 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 29 341 IPR013128 GO:0008234
Glsi13g1367 360 SUPERFAMILY Cysteine proteinases 32 342 IPR038765 -
Glsi13g1367 360 CDD Peptidase_C1A 127 341 IPR039417 -
Glsi13g1367 360 SMART Inhibitor_I29_2 38 93 IPR013201 -
Glsi13g1367 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Glsi13g1367 360 Gene3D Cysteine proteinases 12 344 - -
Glsi13g1367 360 FunFam Senescence-specific cysteine protease SAG39 18 343 - -
Glsi13g1367 360 PRINTS Papain cysteine protease (C1) family signature 144 159 IPR000668 GO:0006508|GO:0008234
Glsi13g1367 360 PRINTS Papain cysteine protease (C1) family signature 302 308 IPR000668 GO:0006508|GO:0008234
Glsi13g1367 360 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Glsi13g1367 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 302 321 IPR025661 -
Glsi13g1367 360 SMART pept_c1 126 342 IPR000668 GO:0006508|GO:0008234
Glsi13g1367 360 Pfam Cathepsin propeptide inhibitor domain (I29) 38 93 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1367 Glsi-ChrGlsi13 30887465 30888907 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0610 02 3998799 4000400 Glsi13g1367 13 30887465 30888907 CCT
Glsi13g1367 13 30887465 30888907 Glsi13g1367 13 30887465 30888907 ECH