Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01190 ATGACCACAGGTAATCTGGTGTCACTTTCAGAGCAAGAGCTAGTGTCTTGTGACACAAAAGGTGAAGACCAAGGGTGTGAAGGGGGTTACGTGGAAGATGCATTTGAATTCGTAAAAAACAATGGTGGAATCACCACTGAAGCTAACTACCCCTACAAGGCAGTTGATGGGAAATGTGAGGTTGCAGCCAGACCAGTAGTTCAAATCAAGGGGTATGAGAACGTTCCTCCCAACAATGAGAGTGCACTCAAGGTAGCTGTGGCTAACCAACCAGTGTCAGTTTGCCTTGATGCAAACAATAAAGATTTCATGCTCTATGCTAGAGGGGTTTACACTGGAAAATGTGGAACTGATCTAGACCATGCTGTTACTGCAGTGGGTTATGGTACAGAAAACGGCACTGACTATTGGCTACTGAAGAATTCATGGAGCACCAATTGGGGTGACAATGGATACATCAAGATGCAACGAGGTGTAGCTGCAAAAGAAGGTTTATGTGGAATTGCCATGGATTCATCTTATCCAACGGCTTGA 534 0.4476 MTTGNLVSLSEQELVSCDTKGEDQGCEGGYVEDAFEFVKNNGGITTEANYPYKAVDGKCEVAARPVVQIKGYENVPPNNESALKVAVANQPVSVCLDANNKDFMLYARGVYTGKCGTDLDHAVTAVGYGTENGTDYWLLKNSWSTNWGDNGYIKMQRGVAAKEGLCGIAMDSSYPTA 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01190 177 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 136 155 IPR025661 -
Vimu5g01190 177 Gene3D Cysteine proteinases 1 177 - -
Vimu5g01190 177 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 2 170 IPR013128 GO:0008234
Vimu5g01190 177 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 119 129 IPR025660 -
Vimu5g01190 177 Pfam Papain family cysteine protease 4 176 IPR000668 GO:0006508|GO:0008234
Vimu5g01190 177 SMART pept_c1 1 176 IPR000668 GO:0006508|GO:0008234
Vimu5g01190 177 CDD Peptidase_C1A 3 175 IPR039417 -
Vimu5g01190 177 SUPERFAMILY Cysteine proteinases 2 176 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01190 Vimu-Chr5 20534363 20534896 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01190 - - gmx:100818606 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01190 5 20534363 20534896 Vimu5g01190 5 20534363 20534896 ECH