Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0985 ATGGTTGCCAAAAATCAACTCTTTCATATTTCATTGACATTGCTTTTGTGCATGGCATTTTGGGCTTTTCAAGTCACATCACGCACTCTCCAAGATGCATCCATATATGAGATGCATCAACAATGGATGGCTCGTCATGCCAAAGTCTATAAGGACCCCGAAGAAAGACAAAAACGTTTCAAGATATTCAAGGACAACGTGAATTACATTGAAGCTTTCAACAGTGCTGCCAATAAACCTTACAAACTAGGCATTAATCAATTTGCTGACCTCACCAATGAGGAGTTTAAAGCACCCAGAAATGGATTCAAGGGGCATATGCTATCCTCAATCACAAGAACACCCTCTTTTAAGTATGAAAATGTGAGTGCAGTACCATCCTCAATAGATTGGAGACAAAAAGGAGCAGTGACACCCATCAAGAACCAAGGCCAATGTGGATGTTGCTGGGCTTTTTCTGCTGTTGCTGCCACTGAAGGAATCCATAAGCTAAGTACTGGAAATTTGATATCTTTATCAGAACAAGAACTCGTTGATTGTGTCAGTGTAGACCACGGTTGTGAGGGTGGTTTTATGGATGATGCTTTCAAATTCATCATTCAAAATCATGGACTCAACACTGAAGCCAATTACCCCTATAAGGGTGTTGATGGAAAATGCAATGCAAATGAAGCGGCCACCCATGCTGCTACCATCACAGGGTATGAGGATGTTCCTACCAACAATGAGAAGGCACTGCAAAAAGCTGTGGCTAATCAACCAGTTTCTGTCGCCATTGATGCCAGTGGTTCTGACTTTCAGTTTTACAAAAGTGGTGTTTTCACAGGTTCATGTGGAACTGAGTTGGATCATGGTGTCACTGCAGTGGGTTATGGTGTTAGTAATGATGGAAATGAGTATTGGTTGATTAAGAACTCATGGGGAACCCAATGGGGTGAAGAAGGCTACATTAGGATGCAAAGGAATGTGAATGCTAAGGAAGGACTCTGTGGCATTGCAATGCTGGCATCTTACCCAACTGCTTAA 1026 0.4211 MVAKNQLFHISLTLLLCMAFWAFQVTSRTLQDASIYEMHQQWMARHAKVYKDPEERQKRFKIFKDNVNYIEAFNSAANKPYKLGINQFADLTNEEFKAPRNGFKGHMLSSITRTPSFKYENVSAVPSSIDWRQKGAVTPIKNQGQCGCCWAFSAVAATEGIHKLSTGNLISLSEQELVDCVSVDHGCEGGFMDDAFKFIIQNHGLNTEANYPYKGVDGKCNANEAATHAATITGYEDVPTNNEKALQKAVANQPVSVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVSNDGNEYWLIKNSWGTQWGEEGYIRMQRNVNAKEGLCGIAMLASYPTA* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0985 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 300 319 IPR025661 -
Apr3g0985 341 PANTHER - 23 340 - -
Apr3g0985 341 CDD Peptidase_C1A 126 339 IPR039417 -
Apr3g0985 341 SUPERFAMILY Cysteine proteinases 33 339 IPR038765 -
Apr3g0985 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 143 154 IPR000169 -
Apr3g0985 341 Pfam Cathepsin propeptide inhibitor domain (I29) 39 96 IPR013201 -
Apr3g0985 341 SMART pept_c1 125 340 IPR000668 GO:0006508|GO:0008234
Apr3g0985 341 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 23 340 - -
Apr3g0985 341 Pfam Papain family cysteine protease 125 339 IPR000668 GO:0006508|GO:0008234
Apr3g0985 341 Gene3D Cysteine proteinases 23 341 - -
Apr3g0985 341 SMART Inhibitor_I29_2 39 96 IPR013201 -
Apr3g0985 341 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 282 292 IPR025660 -
Apr3g0985 341 PRINTS Papain cysteine protease (C1) family signature 143 158 IPR000668 GO:0006508|GO:0008234
Apr3g0985 341 PRINTS Papain cysteine protease (C1) family signature 284 294 IPR000668 GO:0006508|GO:0008234
Apr3g0985 341 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0985 Apr-Chr3 24714795 24715907 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0985 - K16292 gmx:100791826 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0985 3 24714795 24715907 Apr3g0985 3 24714795 24715907 ECH