Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1298 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1300 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1301 . . . Aed5g0876 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g1224 . . . . . . Phco9g01449 . . . . . . . . . . . Tsu02g01949 . . . . . .
Pvu11g1302 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1303 . . . Aed5g0875 . . . . . . . . . . . . . Cca04g01165 . . . . . . . . . . . . . . . . . . . . Lja3g1223 . . . . . . Phco9g01450 . . . . . . . Ssu3g2113 . . . . . . . . Vivi5g03310 .
Pvu11g1304 . . . Aed5g0874 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g1222 . . . . . . Phco9g01451 . . . . . . . . . . . . . . . . Vivi5g03309 .
Pvu11g1305 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1306 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01452 . . . . . . . . . . . . . . . . . .
Pvu11g1307 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1298 Chr11 26861954 26862500 +
Pvu Pvu11g1299 Chr11 26862860 26863305 +
Pvu Pvu11g1300 Chr11 26863526 26863908 +
Pvu Pvu11g1301 Chr11 26869706 26876023 -
Aed Aed5g0876 Chr5 6642327 6649648 -
Lja Lja3g1224 Chr3 12860135 12867595 +
Phco Phco9g01449 Chr9 33544778 33550600 -
Tsu Tsu02g01949 Chr02 18508343 18513295 +
Pvu Pvu11g1302 Chr11 26889847 26890408 +
Pvu Pvu11g1303 Chr11 26891408 26899001 +
Aed Aed5g0875 Chr5 6634840 6641772 -
Cca Cca04g01165 Chr04 13389287 13390265 +
Lja Lja3g1223 Chr3 12853390 12858270 -
Phco Phco9g01450 Chr9 33586671 33593671 +
Ssu Ssu3g2113 Chr3 69386076 69390942 +
Vivi Vivi5g03310 Chr5 123865148 123870265 -
Pvu Pvu11g1304 Chr11 26909853 26913501 +
Aed Aed5g0874 Chr5 6628992 6634169 -
Lja Lja3g1222 Chr3 12848228 12851595 -
Phco Phco9g01451 Chr9 33607901 33609774 +
Vivi Vivi5g03309 Chr5 123861769 123864650 -
Pvu Pvu11g1305 Chr11 26972109 26972452 +
Pvu Pvu11g1306 Chr11 27112469 27112812 +
Phco Phco9g01452 Chr9 33661075 33661399 +
Pvu Pvu11g1307 Chr11 27194831 27195174 +