Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00473 ATGGAAATGAAGAAGCTCCTGTTGGTTGCCCTATCACTAGCCTTGGTTCTCAAAGTGTCTGAGAGCTTTGATTTTCATGAGAAAGATTTAGGGTCTGAGGATAGCTTGTGGGATTTGTACGAGAGGTGGAGGAGCCACCACACATTGTCTCGGAGCCTTGATGAGAAGAAGAAGCGATTTAATGTGTTCAAAGCCAATGTCATGCATGTTCACAACACAAACAAGATGGACAAGCCGTACAAGCTCAAACTCAACAAGTTTGCTGACATGACCAACCATGAATTCAGGAATTTCTATGCTGGATCAAAGGTCAATCACCACAGAATGTTCCGAGGCACGCCACGTGGCATCGGAACATTCATGTTCGAGAATGTTGGTCGGGTTCCTCCTTCTGTTGATTGGAGGCAGAAAGGTGCTGTCACTCCAGTCAAAAATCAAGGCCAATGTGGTAGTTGTTGGGCGTTTTCAACAGTTGTAGCAGTTGAAGGCATTAATCAAATCAAGACAAAGAAGTTAGTGTCCTTATCTGAGCAAGAGTTAGTTGACTGTGACACTGAAGAAAACCAAGGATGCAACGGTGGATTAATGGAATATGCCTTTGAGTATATCAAGAAAAAAGGTGGCCTAGCAACAGAAAAAGATTACCCTTACCTTGCCCAAGAAGGAACTTGTGACGCATCAAAGGAGAATGACATTATAGTTTCCATTGATGGACATGAGAATGTACCTGCCAATGACGAGGATGCTCTGCTCAAAGCTGTGGCCAACCAACCTGTGTCTGTAGCCATTGATGCTGGAGGTTATGATTTCCAATTCTACTCAGAGGGAGTATTTAGTGGAGATTGTACAACAGAGTTGAATCATGGGGTGGCAGTTGTGGGGTACGGAACGACAGTGGATGGAACAAAGTATTGGATAGTGAAGAACTCATGGGGACCAGAATGGGGAGAACAAGGATACATAAGAATGAAACGGGGAGTATCAGAAAAGGAAGGACTGTGTGGCATAGCAATGGAGGCTTCTTACCCTATCAAAAACTCTTCCACTAACCCATCACCACGTTCATCTACTCCTAAAGATGAGCTCTAA 1089 0.4408 MEMKKLLLVALSLALVLKVSESFDFHEKDLGSEDSLWDLYERWRSHHTLSRSLDEKKKRFNVFKANVMHVHNTNKMDKPYKLKLNKFADMTNHEFRNFYAGSKVNHHRMFRGTPRGIGTFMFENVGRVPPSVDWRQKGAVTPVKNQGQCGSCWAFSTVVAVEGINQIKTKKLVSLSEQELVDCDTEENQGCNGGLMEYAFEYIKKKGGLATEKDYPYLAQEGTCDASKENDIIVSIDGHENVPANDEDALLKAVANQPVSVAIDAGGYDFQFYSEGVFSGDCTTELNHGVAVVGYGTTVDGTKYWIVKNSWGPEWGEQGYIRMKRGVSEKEGLCGIAMEASYPIKNSSTNPSPRSSTPKDEL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00473 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Accr12g00473 362 MobiDBLite consensus disorder prediction 343 362 - -
Accr12g00473 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Accr12g00473 362 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 32 342 IPR013128 GO:0008234
Accr12g00473 362 SMART Inhibitor_I29_2 40 95 IPR013201 -
Accr12g00473 362 SUPERFAMILY Cysteine proteinases 33 344 IPR038765 -
Accr12g00473 362 FunFam Senescence-specific cysteine protease SAG39 20 345 - -
Accr12g00473 362 Gene3D Cysteine proteinases 12 346 - -
Accr12g00473 362 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Accr12g00473 362 Pfam Papain family cysteine protease 128 344 IPR000668 GO:0006508|GO:0008234
Accr12g00473 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Accr12g00473 362 SMART pept_c1 128 344 IPR000668 GO:0006508|GO:0008234
Accr12g00473 362 CDD Peptidase_C1A 129 343 IPR039417 -
Accr12g00473 362 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Accr12g00473 362 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Accr12g00473 362 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00473 Accr-Chr12 4370894 4372289 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00473 K16292 - gmx:548011 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00473 12 4370894 4372289 Accr12g00473 12 4370894 4372289 ECH