Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01960 ATGGCTGCCAATAATCAATTAATATATCATATTTCATTGGCTTTGCTTTTGTGTTTGGGATTGTTGGCAGTTCAAGTCACATCTCGCACTCTCCAAGATGACTCTATGTATGAGAGCCATGAGCAATGGATGCGTCACTATGCCAAAGTCTATAAGGATTCTCAAGAAAAGGATAAACGTTCCAAGATATTCACACAAAACATTAATTACATTCAAGCTTTCAACAATGCTGGGAATAACAAACCATACAAGCTAGGCATTAATCAATATGCGGACCTTACTAATGAGGAGTTTATATCATCTAGAAACAAATTCAAGGGGCATATGTGCTCCTCAATCATAAGGACAACTACTTTTAAGTACCAAAATGTAACTGCAGTTCCATCCACAGTTGATTGGAGGAAGAAAGGAGCAGTGACACCTGTGAAGAACCAAGGCCAATGTGGATGTTGTTGGGCGTTTTCTGCTGTTGCAGCAACTGAAGGAATTCATAAGTTGAGTACTGGAAAGTTGATCTCTTTATCAGAACAAGAACTTGTTGATTGTGACACAAAAGGTGTGGACCAAGGTTGTGAGGGTGGTCTTATGGATGATGCTTTCAAATTCATCATTCAAAATCATGGACTCGACACTGAAGCTCAATACCCTTATCAAGGTGTTGATGGAACATGCTACGCAAATGAAGCATCCGTCCATGCAGCTACCATTACTGGTTATGAAGATGTCCCTGCAAACAATGAGCAAGCATTACAAAAAGCTGTGGCAAATCAACCAATTTCTGTAGCCATTGATGCTAGTGGGTCTGACTTTCAATTTTACAAAAGTGGTGTCTTTACAGGTTCATGTGGAACTGAGTTGGATCATGGAGTCACTGCTGTGGGTTATGGTGTGAGTAATGATGGAACCAAGTATTGGTTGGTTAAGAACTCATGGGGCACTGATTGGGGTGAACAAGGTTACATTAGGATGCAAAGGGGAGTCGATGCTGCTGAAGGACTTTGTGGAATTGCAATGCAAGCATCTTACCCTACTGCTTAA 1038 0.4075 MAANNQLIYHISLALLLCLGLLAVQVTSRTLQDDSMYESHEQWMRHYAKVYKDSQEKDKRSKIFTQNINYIQAFNNAGNNKPYKLGINQYADLTNEEFISSRNKFKGHMCSSIIRTTTFKYQNVTAVPSTVDWRKKGAVTPVKNQGQCGCCWAFSAVAATEGIHKLSTGKLISLSEQELVDCDTKGVDQGCEGGLMDDAFKFIIQNHGLDTEAQYPYQGVDGTCYANEASVHAATITGYEDVPANNEQALQKAVANQPISVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVSNDGTKYWLVKNSWGTDWGEQGYIRMQRGVDAAEGLCGIAMQASYPTA 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01960 345 SMART Inhibitor_I29_2 40 98 IPR013201 -
Car06g01960 345 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 145 156 IPR000169 -
Car06g01960 345 PANTHER - 25 344 - -
Car06g01960 345 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Car06g01960 345 CDD Peptidase_C1A 128 343 IPR039417 -
Car06g01960 345 Pfam Papain family cysteine protease 127 344 IPR000668 GO:0006508|GO:0008234
Car06g01960 345 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Car06g01960 345 Gene3D Cysteine proteinases 22 345 - -
Car06g01960 345 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 344 - -
Car06g01960 345 PRINTS Papain cysteine protease (C1) family signature 145 160 IPR000668 GO:0006508|GO:0008234
Car06g01960 345 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Car06g01960 345 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Car06g01960 345 SUPERFAMILY Cysteine proteinases 33 343 IPR038765 -
Car06g01960 345 Pfam Cathepsin propeptide inhibitor domain (I29) 40 98 IPR013201 -
Car06g01960 345 SMART pept_c1 127 344 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01960 Car-Chr6 19593973 19595104 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01960 - K16292 gmx:102666929 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01960 06 19593973 19595104 Car06g01960 06 19593973 19595104 ECH