Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01460 ATGACTTCCATTAGGAAAAACCAGCATGTTTTAGCTCTACTTCTTCTCTCAATTTGTTCTTCCCAAGTAATGTCCCGCAACATCCATGAGGCATCTATGTCCCAAAGACATGAGCAGTGGATGAAACAATATGGTAGAACATACAAGGATGCTGCAGAGAAGCAAAAACGTTTCCTCATATTCAAGGACAACGTTCAATTCATTGAATCCTTCAATGCTGCTGGCAACAAACCTTACAAGCTTGGCATCAATCACCTAGCTGACCAAACCAATGAAGAATTTATTGCTTCCCATACTGGATACAAGGGATCGCATGAGTTGAGAATCACAGCACAAACACCATTTAAGTATGAAAACGTTACTCGTATTCCTACAGCAGTGGATTGGAGGCAAAATGGAGCCGTCACTCCAATCAAGGACCAAGGCCATTGTGGTAGCTGCTGGGCATTCTCAACAGTTGCTGCAACAGAAGGTATCTACCAAATAACTACAGGTAAGCTAGTGTCCCTCTCAGAGCAAGAGTTAGTGGACTGTGACAGTGTGGATCAAGGATGTGATGGAGGTCTCATGGAAGATGGTTTCGAATTCATTATAAAAAATGGTGGAATCACCAGTGAGGCAAACTACCCCTACTCTGGAGTTAATGAAACTTGTGACACAAGGAAAGAGGCTTCTCTAGAAGCTCAAATAAAAGGGTATGAAACAGTACCTGCAAATAGTGAGGAAGCACTACAGAAAGCAGTTGCAAACCAACCTGTGTCAGTTAGCATTGATGCTGGAGGATCTGCTTTTCAATTTTACTCAAGTGGGGTTTTCACTGGACAATGTGGAACTCAACTAGACCATGGTGTTACTGCAGTTGGCTATGGAATCACCGATAATGGTACTGAGTATTGGATAGTGAAAAATTCATGGGGCACACAATGGGGTGAAGAAGGATACATAAGAATGGAACGGGGCATAGATGCCAAAGAAGGCCTATGTGGCATTGCCATGGATGCTTCATACCCAGTTGCTTAA 1020 0.4294 MTSIRKNQHVLALLLLSICSSQVMSRNIHEASMSQRHEQWMKQYGRTYKDAAEKQKRFLIFKDNVQFIESFNAAGNKPYKLGINHLADQTNEEFIASHTGYKGSHELRITAQTPFKYENVTRIPTAVDWRQNGAVTPIKDQGHCGSCWAFSTVAATEGIYQITTGKLVSLSEQELVDCDSVDQGCDGGLMEDGFEFIIKNGGITSEANYPYSGVNETCDTRKEASLEAQIKGYETVPANSEEALQKAVANQPVSVSIDAGGSAFQFYSSGVFTGQCGTQLDHGVTAVGYGITDNGTEYWIVKNSWGTQWGEEGYIRMERGIDAKEGLCGIAMDASYPVA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01460 339 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 280 290 IPR025660 -
Phco9g01460 339 CDD Peptidase_C1A 124 337 IPR039417 -
Phco9g01460 339 SMART pept_c1 123 338 IPR000668 GO:0006508|GO:0008234
Phco9g01460 339 PRINTS Papain cysteine protease (C1) family signature 298 304 IPR000668 GO:0006508|GO:0008234
Phco9g01460 339 PRINTS Papain cysteine protease (C1) family signature 141 156 IPR000668 GO:0006508|GO:0008234
Phco9g01460 339 PRINTS Papain cysteine protease (C1) family signature 282 292 IPR000668 GO:0006508|GO:0008234
Phco9g01460 339 Pfam Cathepsin propeptide inhibitor domain (I29) 37 94 IPR013201 -
Phco9g01460 339 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 298 317 IPR025661 -
Phco9g01460 339 Pfam Papain family cysteine protease 123 338 IPR000668 GO:0006508|GO:0008234
Phco9g01460 339 FunFam Senescence-specific cysteine protease SAG39 18 339 - -
Phco9g01460 339 Gene3D Cysteine proteinases 15 339 - -
Phco9g01460 339 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 332 IPR013128 GO:0008234
Phco9g01460 339 SMART Inhibitor_I29_2 37 94 IPR013201 -
Phco9g01460 339 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 141 152 IPR000169 -
Phco9g01460 339 SUPERFAMILY Cysteine proteinases 29 338 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01460 Phco-Chr9 33904768 33905891 Proximal