Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01860 ATGGTTGCCAACATCCAATTCCATCATATTACTCTAGCTTTGATCCTCTGCTCGGCATTATTGGCTTTTCAAGTCACATCGCGCACTCTACAAGATGCGAGCATGTATGAGAGGCACGAGCAATGGATGGCTCGCTACGGCAAAGTCTACAAAGACCTCCAAGAAAGGGAGAAGCGATTCAAGATATTCAAGGAAAATGTGAACTACATTGAAGCTTCTAACAATGCCGGGGACAAAGCTTACAAGCTAGGCATTAATCAATTTGCTGACCTCACAAATGAAGAGTTCACATCATCCAGAAATGGATTCAAGAGCCACATGAGTCCCTCAATTGAACGGACCACTTTTAAGTATGCAAATGTCACTGCAGTACCAAACACTGTGGATTGGAGACAAAAAGGAGCAGTGACTCCCATCAAGAACCAACAACAATGTGGATGTTGCTGGGCATTTTCTGCTGTTGCAGCAACCGAGGGAATCAACAAACTGAAGTCTGGAACTTTGATTTCTTTATCCGAACAAGAACTTGTGGATTGCGACACTAAAGGTATCGACCAAGGTTGCGAGGGCGGCCTAATGGACGATGCATTCAAATTCATTATTCAAAATGGCGGACTAACGACTGAGGCCAAGTACCCTTATAAAGGTGTTGATGGAAAATGCAATACAAAAGCATCAGCCAACCATGCAGCTACCATTACTGGCTACGAAGATGTCCCCGCCAACAACGAGCAAGCACTGAAAAATGCAGTCGCTAATCAACCTGTTTCTGTGGCCATTGATGCTAGTGGCTCTGATTTCCAGTTCTATAAGGGTGGTGTCTTCACTGGAAGCTGTGGAACTGAGTTAGATCATGGTGTCACTGCTGTGGGTTATGGAGTCAGTGACGATGGAACAAAATATTGGTTAGTTAAGAACTCATGGGGAACTGAATGGGGCGAAGAAGGATATATCAGAATGCAAAGGGATGTAGACGCCACAGAAGGACTTTGTGGCATAGCAATGCAAGCTTCTTACCCAACTGCTTAG 1029 0.4461 MVANIQFHHITLALILCSALLAFQVTSRTLQDASMYERHEQWMARYGKVYKDLQEREKRFKIFKENVNYIEASNNAGDKAYKLGINQFADLTNEEFTSSRNGFKSHMSPSIERTTFKYANVTAVPNTVDWRQKGAVTPIKNQQQCGCCWAFSAVAATEGINKLKSGTLISLSEQELVDCDTKGIDQGCEGGLMDDAFKFIIQNGGLTTEAKYPYKGVDGKCNTKASANHAATITGYEDVPANNEQALKNAVANQPVSVAIDASGSDFQFYKGGVFTGSCGTELDHGVTAVGYGVSDDGTKYWLVKNSWGTEWGEEGYIRMQRDVDATEGLCGIAMQASYPTA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01860 342 PANTHER - 23 341 - -
Aip03g01860 342 PRINTS Papain cysteine protease (C1) family signature 142 157 IPR000668 GO:0006508|GO:0008234
Aip03g01860 342 PRINTS Papain cysteine protease (C1) family signature 285 295 IPR000668 GO:0006508|GO:0008234
Aip03g01860 342 PRINTS Papain cysteine protease (C1) family signature 301 307 IPR000668 GO:0006508|GO:0008234
Aip03g01860 342 Pfam Cathepsin propeptide inhibitor domain (I29) 39 96 IPR013201 -
Aip03g01860 342 CDD Peptidase_C1A 125 340 IPR039417 -
Aip03g01860 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 283 293 IPR025660 -
Aip03g01860 342 Pfam Papain family cysteine protease 124 341 IPR000668 GO:0006508|GO:0008234
Aip03g01860 342 Gene3D Cysteine proteinases 18 342 - -
Aip03g01860 342 SMART pept_c1 124 341 IPR000668 GO:0006508|GO:0008234
Aip03g01860 342 SMART Inhibitor_I29_2 39 96 IPR013201 -
Aip03g01860 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 301 320 IPR025661 -
Aip03g01860 342 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 23 341 - -
Aip03g01860 342 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 142 153 IPR000169 -
Aip03g01860 342 SUPERFAMILY Cysteine proteinases 31 341 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01860 Aip-Chr3 23858184 23859307 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01860 - K16292 gmx:102666929 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01860 03 23858184 23859307 Aip03g01860 03 23858184 23859307 ECH