Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1197 ATGATTCAAATGAAGAAGCTCTTCTTGGTCCTTCTATCACTTGCTCTGTTTCAAGGAATCTCCGAGTGCTTCGACTTCCACGAGAAGGATCTGTCATCGGAGGAGAGCCTGTGGGATCTGTACGAGAGATGGAGGAGCCACCATACGGTTTCTAGAAGCCTTGACGAGAAGCACAGGCGATTCAACGTGTTCAAAGCCAACGTCATGCACGTCCACAACACGAACAAAATGGATAAGCCGTACAAGCTGAAGCTCAACAAGTTCGCCGACATGACCAACCACGAATTCAGGAGTGCCTATGCGGGCTCCAAGGTTGACCACCACAGGATGTTCCGAGGCATGCCACGTGGCAATGGGACCTTCATGCACGAGAACGTTGACAGAGTTCCTCCGTCTGTGGATTGGAGGAAGAAAGGTGCTGTCACTCCGGTCAAGAATCAAGGCCAATGTGGTAGTTGCTGGGCGTTCTCAACGGTGGCAGCAGTGGAAGGCATAAATCAGATAAAGACAGGGAAGCTGGTGTCGCTGTCAGAGCAGGAGTTAGTGGACTGTGACACTCAACAGAATCAGGGATGCAACGGAGGGTTAATGGAGTATGCTTTTGAGTTCATCAAGCAAAAGGGCGGCATAACCACAGAAAAGAATTATCCTTACAAAGCCAGAGATGGAAAGTGCGATGCATCAAAGGAGGATGAGGTGGCAGTGTCGATTGATGGGCATGAGAATGTGCCTGCGAACGATGAGGACGCTTTGCTCAAGGCTGTTGCCAACCAGCCTGTGTCTGTGGCCATTGATGCTGGGGGTTTTGATTTCCAATTCTATTCTGAGGGAGTATTTGGCGGAGAGTGCAATACAGACTTGGACCACGGGGTGGCGATAGTGGGGTATGGAACCACAGTGGATGGAACCAAATACTGGACTGTCAAGAACTCCTGGGGACCCGAATGGGGCGAACAGGGTTTCATCAGAATGCAGAGAGGCGTCTCACGCAGAGAGGGTCTCTGCGGCATAGCCATGGAGGCTTCCTACCCCATCAAGCACTCTTCCTCTCCTAAAGACGAGCTCTGA 1068 0.5122 MIQMKKLFLVLLSLALFQGISECFDFHEKDLSSEESLWDLYERWRSHHTVSRSLDEKHRRFNVFKANVMHVHNTNKMDKPYKLKLNKFADMTNHEFRSAYAGSKVDHHRMFRGMPRGNGTFMHENVDRVPPSVDWRKKGAVTPVKNQGQCGSCWAFSTVAAVEGINQIKTGKLVSLSEQELVDCDTQQNQGCNGGLMEYAFEFIKQKGGITTEKNYPYKARDGKCDASKEDEVAVSIDGHENVPANDEDALLKAVANQPVSVAIDAGGFDFQFYSEGVFGGECNTDLDHGVAIVGYGTTVDGTKYWTVKNSWGPEWGEQGFIRMQRGVSRREGLCGIAMEASYPIKHSSSPKDEL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1197 355 FunFam Senescence-specific cysteine protease SAG39 21 346 - -
Bisa02g1197 355 CDD Peptidase_C1A 130 344 IPR039417 -
Bisa02g1197 355 Pfam Cathepsin propeptide inhibitor domain (I29) 41 96 IPR013201 -
Bisa02g1197 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 305 324 IPR025661 -
Bisa02g1197 355 SMART Inhibitor_I29_2 41 96 IPR013201 -
Bisa02g1197 355 Pfam Papain family cysteine protease 129 345 IPR000668 GO:0006508|GO:0008234
Bisa02g1197 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 147 158 IPR000169 -
Bisa02g1197 355 SUPERFAMILY Cysteine proteinases 34 345 IPR038765 -
Bisa02g1197 355 PRINTS Papain cysteine protease (C1) family signature 147 162 IPR000668 GO:0006508|GO:0008234
Bisa02g1197 355 PRINTS Papain cysteine protease (C1) family signature 289 299 IPR000668 GO:0006508|GO:0008234
Bisa02g1197 355 PRINTS Papain cysteine protease (C1) family signature 305 311 IPR000668 GO:0006508|GO:0008234
Bisa02g1197 355 SMART pept_c1 129 345 IPR000668 GO:0006508|GO:0008234
Bisa02g1197 355 Gene3D Cysteine proteinases 15 347 - -
Bisa02g1197 355 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 32 343 IPR013128 GO:0008234
Bisa02g1197 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 287 297 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1197 Bisa-ChrBisa02 20115704 20117637 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2079 08 49880677 49881687 Bisa02g1197 02 20115704 20117637 CCT
Bisa02g1197 02 20115704 20117637 Bisa02g1197 02 20115704 20117637 ECH