Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01457 ATGGCTTCCACAACCCAAAAACCATACATTTTAGCTCTATTCCTTCTCTTTGCAGTTGGCATTTCCCAAGTGATGTCCCGCAAGCTGCATGAGACATCCTTGAGAGAAAGACATGAAAACTGGATGCAAGAATATGGCAAAGTGTATAAGGACGCTGCAGAGAATGAAAAACGTTTCCTCATATTCAAGGACAATGTGGAGTTCATTGAATCATTCAATGCTGTTGGCAACAAACCCTACAAGCTTGGGGTTAATCACTTTGCTGACCTCACAGTTCAGGAATTCAAGGCTTCCCGTAATGGATTCAAGAGCCCTCACGAGTTTAGCACAACACCATTTAAGTATGAAAATGTAACTGCTATTCCTGCAGCCATAGACTGGAGGAAAAAAGGAGCTGTTACTCCAATAAAAAACCAAGGTCAATGTGGGAGCTGTTGGGCATTTTCAACTGTGGCTGCAACTGAAGGTATCCATCAAATAGCCACAGGCAAACTAGTATCCCTCTCGGAGCAGGAGCTAGTGGACTGTGACACAAAAGGTGTGGACCAAGGGTGTGAAGGGGGTTACATGGAAGATGGGTTTGAATTCATTATAAAAAATGGTGGAATCACCAGTGAGGCAAACTACCCCTACAAGGCAGCTGATGGCACTTGCAAGAAAGGAACCTCCCCAGTTGCTCAAATTAAGGGGTATGAGAAGGTTCCTCCAAATAGTGAGAAGGCACTGCAGAAAGCTGTAGCTAACCAACCAGTGTCAGTTTCGATCAATGCAGATGGTTCAGGTTTCATGTTTTACTCTAGTGGAATTTACTCTGGAGAATGTGGAACTGAACTAGACCATGGTGTTACTGCAGTGGGTTATGGCATTGCTAATGGAACTGAGTATTGGTTAGTGAAGAATTCATGGGGCACACAATGGGGTGAAGAAGGATATGTGAGGATGAAGAGAGGTATATCTGCCAAGCATGGTTTATGTGGAATTGCCTTGGATTCATCTTATCCAACTGCATAA 1011 0.4372 MASTTQKPYILALFLLFAVGISQVMSRKLHETSLRERHENWMQEYGKVYKDAAENEKRFLIFKDNVEFIESFNAVGNKPYKLGVNHFADLTVQEFKASRNGFKSPHEFSTTPFKYENVTAIPAAIDWRKKGAVTPIKNQGQCGSCWAFSTVAATEGIHQIATGKLVSLSEQELVDCDTKGVDQGCEGGYMEDGFEFIIKNGGITSEANYPYKAADGTCKKGTSPVAQIKGYEKVPPNSEKALQKAVANQPVSVSINADGSGFMFYSSGIYSGECGTELDHGVTAVGYGIANGTEYWLVKNSWGTQWGEEGYVRMKRGISAKHGLCGIALDSSYPTA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01457 336 CDD Peptidase_C1A 122 334 IPR039417 -
Phco9g01457 336 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 295 314 IPR025661 -
Phco9g01457 336 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 139 150 IPR000169 -
Phco9g01457 336 SMART Inhibitor_I29_2 38 95 IPR013201 -
Phco9g01457 336 Pfam Cathepsin propeptide inhibitor domain (I29) 38 95 IPR013201 -
Phco9g01457 336 Pfam Papain family cysteine protease 121 334 IPR000668 GO:0006508|GO:0008234
Phco9g01457 336 Gene3D Cysteine proteinases 19 336 - -
Phco9g01457 336 PRINTS Papain cysteine protease (C1) family signature 139 154 IPR000668 GO:0006508|GO:0008234
Phco9g01457 336 PRINTS Papain cysteine protease (C1) family signature 280 290 IPR000668 GO:0006508|GO:0008234
Phco9g01457 336 PRINTS Papain cysteine protease (C1) family signature 295 301 IPR000668 GO:0006508|GO:0008234
Phco9g01457 336 FunFam Senescence-specific cysteine protease SAG39 19 336 - -
Phco9g01457 336 SMART pept_c1 121 335 IPR000668 GO:0006508|GO:0008234
Phco9g01457 336 SUPERFAMILY Cysteine proteinases 30 335 IPR038765 -
Phco9g01457 336 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 26 328 IPR013128 GO:0008234
Phco9g01457 336 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 278 288 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01457 Phco-Chr9 33871461 33872968 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01457 9 33871461 33872968 Phco9g01457 9 33871461 33872968 ECH