Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02978 ATGGCGgccaaaaatcaattatatcatAGTTCATTGGCATTGTTTTTCTGCTTGGGATTGTGGGCTATTCAAGTCAATTCTCGCACTCTCCAAGATGGCTCCATGTATGCGAGGCACGAGCAATGGATGGGTCAGTATAGCAAAGTCTATAAAGATCCTCAAGAAAGAGAGACACGGCTCAAGATATTCACAGAAAACGTCAATTACATTGAAGCTTCCAACAATGCTAGAAATAGCAAGCTATACAAATTAGGCATTAATCAATTTGCGGATCTCACCAATGAGGAGTTCATAGCATCTAGAAACAAATTCAAGGGGCATATGTGTTCCTCAATCATAAGAACAACTACTTTTAAGTACGAAAATGCAAGTTCAATTCCATCCGCGGTGGACTGGAGAAAGGAAGGAGCAGTGACACCCGTAAAGAACCAAGGCCAATGCGGATGTTGCTGGGCATTTTCTGCGGTTGCAGCAACTGAAGGAATTCATAAGTTGAGCACTGGAAATTTGGTCTCTTTATCAGAACAAGAACTTGTTGATTGTGACACAAAAGGTGTGGACCAAGGTTGTGAGGGTGGTCTTATGGACGATGCTTTCAAATTCATTATTCAAAATCATGGACTCAACACTGAAGCTCAATACCCCTATCAAGGTGTTGACGGAACATGTAGTGCAAACGAAGCATCCACCAATGCAGCTACCATTACCGGGTATGAAGATGTTCCTGCCAACAATGAGCAGGCACTGCAAAAAGCTGTGGCAAATCAACCAATTTCTGTAGCCATTGATGCTAGTGGGTCTGActttcaattttacaaaagcGGTGTCTTTACCGGTTCATGTGGAACTCAGTTGGATCACGGTGTCACTGCTGTTGGATACGGTGTTGGTAATGATGGAACTAAGTATTGGTTGGTAAAGAACTCGTGGGGAACCGATTGGGGTGAAGAAGGATACATTAGGATGCAAAGGGGAGTTGATGCTGCCGAAGGACTTTGTGGCATTGCAATGCAAGCATCTTATCCTACTGCTTAA 1035 0.4203 MAAKNQLYHSSLALFFCLGLWAIQVNSRTLQDGSMYARHEQWMGQYSKVYKDPQERETRLKIFTENVNYIEASNNARNSKLYKLGINQFADLTNEEFIASRNKFKGHMCSSIIRTTTFKYENASSIPSAVDWRKEGAVTPVKNQGQCGCCWAFSAVAATEGIHKLSTGNLVSLSEQELVDCDTKGVDQGCEGGLMDDAFKFIIQNHGLNTEAQYPYQGVDGTCSANEASTNAATITGYEDVPANNEQALQKAVANQPISVAIDASGSDFQFYKSGVFTGSCGTQLDHGVTAVGYGVGNDGTKYWLVKNSWGTDWGEEGYIRMQRGVDAAEGLCGIAMQASYPTA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02978 344 SMART Inhibitor_I29_2 39 97 IPR013201 -
Tsu02g02978 344 SMART pept_c1 126 343 IPR000668 GO:0006508|GO:0008234
Tsu02g02978 344 Pfam Cathepsin propeptide inhibitor domain (I29) 39 97 IPR013201 -
Tsu02g02978 344 Gene3D Cysteine proteinases 22 344 - -
Tsu02g02978 344 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 343 - -
Tsu02g02978 344 PRINTS Papain cysteine protease (C1) family signature 144 159 IPR000668 GO:0006508|GO:0008234
Tsu02g02978 344 PRINTS Papain cysteine protease (C1) family signature 287 297 IPR000668 GO:0006508|GO:0008234
Tsu02g02978 344 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
Tsu02g02978 344 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Tsu02g02978 344 SUPERFAMILY Cysteine proteinases 34 342 IPR038765 -
Tsu02g02978 344 Pfam Papain family cysteine protease 126 343 IPR000668 GO:0006508|GO:0008234
Tsu02g02978 344 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 285 295 IPR025660 -
Tsu02g02978 344 PANTHER - 24 343 - -
Tsu02g02978 344 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 144 155 IPR000169 -
Tsu02g02978 344 CDD Peptidase_C1A 127 342 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02978 Tsu-Chr2 32835678 32836819 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02978 - K16292 gmx:102666929 605.52