Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g0088 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g01150 . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu5g02788 . . Vra2g0087
Pvu11g0089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0090 . . Adu03g00990 Aed5g0079 Aev04g3716 . Ahy13g1211 Aip03g01334 . Amo13g1592 . Apr5g0643 Arst3g01276 . . . Car06g03197 Cca04g00087 . Dod03g2526 . . Gma12g00072 . . . . . Lal9g0022 . . . Lapu11g01086 . . . . . Lja3g0083 Mal7g1197 Mepo2g01367 Mesa13g03825 . Mtr4g1332 . . . . Pste1g00362 Pumo11g02249 Rops3g00112 Seca6g00163 Spst2g02941 Ssu3g3270 . Tpr4g1210 Trre7g01238 Tsu06g01145 Vian5g01824 . Vimu5g02786 Viun11g02964 . Vra2g0088
Pvu11g0091 . . Adu03g00989 . Aev04g3715 . Ahy13g1210 Aip03g01317 . Amo13g1582 . . Arst3g01275 . . . . . . Dod03g2527 . . . . Gso12g0064 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr4g1211 . Tsu06g00954 . . Vimu5g02785 . . .
Pvu11g0092 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0093 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0094 . . Adu03g00987 Aed5g0081 Aev04g3713 . Ahy13g1208 Aip03g01315 . Amo13g1581 . Apr5g0641 . Bach9g01153 . Bva07g01270 . Cca04g00089 . Dod03g2529 . . Gma12g00073 . Gso12g0065 . . . . . . . Lapu11g01085 . . . . . Lja3g0084 . . . . . . Phco9g00122 . . Pste1g00371 Pumo11g02246 Rops3g00114 Seca6g00170 Spst2g02939 Ssu3g3268 . Tpr3g4554 . Tsu06g00955 Vian5g01821 . Vimu5g02783 Viun11g02960 . Vra2g0090
Pvu11g0095 . . . . . . . . . Amo13g1567 . . Arst3g01273 . . . Car06g03086 . . . . . . . . . . . . . Lan8g1939 . . . . . . . . Mal7g1198 . . . . . Phco9g00123 . . . . . . . . . . . . . . . . Vivi5g01490 .
Pvu11g0096 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0097 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Tpr Tpr3g4554 Chr3 50683357 50690167 -
Pvu Pvu11g0088 Chr11 618621 625896 -
Lasa Lasa7g01150 Chr7 206008598 206010817 -
Vimu Vimu5g02788 Chr5 37370238 37373616 +
Vra Vra2g0087 Chr2 695825 701267 -
Pvu Pvu11g0089 Chr11 629442 630367 -
Pvu Pvu11g0090 Chr11 637169 640503 +
Adu Adu03g00990 Chr03 10120120 10135190 -
Aed Aed5g0079 Chr5 598242 601075 +
Aev Aev04g3716 Chr04 34541553 34544297 -
Ahy Ahy13g1211 Chr13 13936535 13938961 -
Aip Aip03g01334 Chr03 13584279 13587995 -
Amo Amo13g1592 Chr13 21473139 21476981 -
Apr Apr5g0643 Chr5 8813584 8817772 -
Arst Arst3g01276 Chr3 10562152 10566133 -
Car Car06g03197 Chr06 58919146 58922846 -
Cca Cca04g00087 Chr04 781186 786798 +
Dod Dod03g2526 Chr03 56836594 56841140 +
Gma Gma12g00072 Chr12 553258 557181 +
Lal Lal9g0022 Chr9 126050 128859 -
Lapu Lapu11g01086 Chr11 13019349 13023040 -
Lja Lja3g0083 Chr3 922800 925946 +
Mal Mal7g1197 Chr7 38551873 38555798 -
Mepo Mepo2g01367 Chr2 19919412 19921601 -
Mesa Mesa13g03825 Chr13 53270233 53273305 +
Mtr Mtr4g1332 Chr4 22897255 22900264 -
Pste Pste1g00362 Chr1 1281463 1284861 +
Pumo Pumo11g02249 Chr11 55011993 55015697 -
Rops Rops3g00112 Chr3 1578039 1582174 +
Seca Seca6g00163 Chr6 4150942 4154530 -
Spst Spst2g02941 Chr2 29123312 29126514 -
Ssu Ssu3g3270 Chr3 89084809 89085630 -
Tpr Tpr4g1210 Chr4 11705994 11710017 -
Trre Trre7g01238 Chr7 8761607 8764708 -
Tsu Tsu06g01145 Chr06 10464803 10467150 -
Vian Vian5g01824 Chr5 40431695 40434472 -
Vimu Vimu5g02786 Chr5 37350754 37357245 -
Viun Viun11g02964 Chr11 41085398 41088288 -
Vra Vra2g0088 Chr2 708722 716274 +
Pvu Pvu11g0091 Chr11 641687 645134 +
Adu Adu03g00989 Chr03 10092518 10095844 -
Aev Aev04g3715 Chr04 34537383 34540278 -
Ahy Ahy13g1210 Chr13 13928601 13931917 -
Aip Aip03g01317 Chr03 13449702 13453051 -
Amo Amo13g1582 Chr13 21363190 21366414 -
Arst Arst3g01275 Chr3 10550728 10553525 -
Dod Dod03g2527 Chr03 56844185 56848666 +
Gso Gso12g0064 Chr12 550434 554314 +
Tpr Tpr4g1211 Chr4 11715634 11719770 +
Tsu Tsu06g00954 Chr06 8697049 8702084 +
Vimu Vimu5g02785 Chr5 37345730 37348514 -
Pvu Pvu11g0092 Chr11 655802 656460 +
Pvu Pvu11g0093 Chr11 662417 664880 -
Pvu Pvu11g0094 Chr11 666842 672462 -
Adu Adu03g00987 Chr03 10084866 10087913 +
Aed Aed5g0081 Chr5 611320 614964 -
Aev Aev04g3713 Chr04 34530666 34533471 +
Ahy Ahy13g1208 Chr13 13920829 13924265 +
Aip Aip03g01315 Chr03 13442065 13445111 +
Amo Amo13g1581 Chr13 21355445 21358940 +
Apr Apr5g0641 Chr5 8801646 8807904 +
Bach Bach9g01153 Chr9 9043547 9047798 -
Bva Bva07g01270 Chr07 13509533 13513935 +
Cca Cca04g00089 Chr04 798851 805795 -
Dod Dod03g2529 Chr03 56856087 56860774 -
Gma Gma12g00073 Chr12 558014 561818 -
Gso Gso12g0065 Chr12 555100 558967 -
Lapu Lapu11g01085 Chr11 13015044 13017725 -
Lja Lja3g0084 Chr3 931411 937938 +
Phco Phco9g00122 Chr9 787406 792518 +
Pste Pste1g00371 Chr1 1294305 1296518 -
Pumo Pumo11g02246 Chr11 54997273 55002203 +
Rops Rops3g00114 Chr3 1588360 1594940 -
Seca Seca6g00170 Chr6 4323572 4329567 -
Spst Spst2g02939 Chr2 29110634 29115417 +
Ssu Ssu3g3268 Chr3 89060724 89066193 +
Tpr Tpr3g4554 Chr3 50683357 50690167 -
Tsu Tsu06g00955 Chr06 8708509 8715057 -
Vian Vian5g01821 Chr5 40411587 40417450 +
Vimu Vimu5g02783 Chr5 37333644 37338464 +
Viun Viun11g02960 Chr11 41074640 41080198 +
Vra Vra2g0090 Chr2 725756 730886 -
Pvu Pvu11g0095 Chr11 678296 681066 -
Amo Amo13g1567 Chr13 21201074 21204429 -
Arst Arst3g01273 Chr3 10523136 10526420 -
Car Car06g03086 Chr06 54920922 54925507 -
Lan Lan8g1939 Chr8 25394472 25397056 +
Mal Mal7g1198 Chr7 38573449 38578224 +
Phco Phco9g00123 Chr9 797734 800579 -
Vivi Vivi5g01490 Chr5 45233087 45236047 +
Pvu Pvu11g0096 Chr11 701196 702962 +
Pvu Pvu11g0097 Chr11 706872 708926 +
Tsu Tsu06g01145 Chr06 10464803 10467150 -
Mepo Mepo2g01367 Chr2 19919412 19921601 -
Mesa Mesa13g03825 Chr13 53270233 53273305 +
Mtr Mtr4g1332 Chr4 22897255 22900264 -
Trre Trre7g01238 Chr7 8761607 8764708 -