Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g0078 . . Adu03g01000 Aed5g0071 Aev04g3717 . Ahy13g1222 Aip03g01337 . Amo13g1596 . Apr5g0646 Arst3g01287 Bach9g01441 . Bva07g00876 Car06g03095 Cca04g00082 . Dod03g2523 . . Gma12g00068 . Gso12g0058 . Lal1g0029 . . . . Lan13g0036 Lapu11g01092 Lasa7g00910 . . . . Lja3g0074 . . . . . . . . Psa7g3658 Pste1g00341 Pumo11g02253 Rops3g00101 Seca6g00151 Spst2g02947 Ssu3g3278 . Tpr4g1206 . Tsu06g00945 Vian5g01834 . Vimu5g02799 Viun11g02977 . Vra2g0077
Pvu11g0079 Acco08g1580 Accr13g01543 Adu03g00999 Aed5g0072 . . Ahy13g1221 Aip03g01336 . Amo13g1595 . Apr5g0645 Arst3g01286 Bach9g01440 . Bva07g00877 Car06g03094 Cca04g00083 Dere07g1564 Dod03g2524 . . Gma12g00069 . Gso12g0059 . . . . . . . Lapu11g01091 Lasa7g00911 Lele29g1066 . Lele31g0470 . Lja3g0076 . . . Mibi07g1502 . . . . . Pste1g00355 Pumo11g02252 . Seca6g00152 Spst2g02946 Ssu3g3277 Sto4g2490 Tpr4g1207 . Tsu06g00946 Vian5g01832 . Vimu5g02797 Viun11g02973 . Vra2g0079
Pvu11g0080 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0081 . . . . . . Ahy13g1220 . . . . . . . . . Car06g03088 . . . . . . . . . . . . . . . . . . . . . . Mal7g1191 . . . . . . Prci6g1766 . . . . . . Ssu3g3275 Sto4g2486 . . . . . . . . .
Pvu11g0082 . . Adu03g00997 . . . . . . . . . . . . . . Cca04g00084 . Dod03g2525 . . . . Gso12g0061 . . . . . . . . . . . . . Lja3g0082 . . . . . . . Prci6g1765 . . . . . . Ssu3g3272 Sto4g2485 Tpr4g1208 . Tsu06g00951 . Vifa4g04913 . . . Vra2g0080
Pvu11g0083 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g0084 . . . Aed5g0078 . . . Aip03g01335 . Amo13g1593 . Apr5g0644 . . . . Car06g03087 Cca04g00085 . . . . Gma12g00071 . Gso12g0063 . . . . . . . . . . . . . . . . . . . . . Prci6g1764 . . Pumo11g02250 . . . . Sto4g2480 . . . . Vifa4g04914 . . . .
Pvu11g0085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu5g02791 . . Vra2g0084
Pvu11g0086 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu5g02790 . . Vra2g0085
Pvu11g0087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu11g0078 Chr11 564555 571216 +
Adu Adu03g01000 Chr03 10255995 10259082 -
Aed Aed5g0071 Chr5 528387 534104 +
Aev Aev04g3717 Chr04 34560484 34568116 -
Ahy Ahy13g1222 Chr13 14152010 14157233 -
Aip Aip03g01337 Chr03 13671693 13679555 -
Amo Amo13g1596 Chr13 21547245 21552016 -
Apr Apr5g0646 Chr5 8904710 8910993 -
Arst Arst3g01287 Chr3 10685959 10690312 -
Bach Bach9g01441 Chr9 13013574 13024306 -
Bva Bva07g00876 Chr07 10668564 10678255 +
Car Car06g03095 Chr06 55541161 55551647 -
Cca Cca04g00082 Chr04 731988 738886 +
Dod Dod03g2523 Chr03 56770014 56776350 +
Gma Gma12g00068 Chr12 498715 506123 +
Gso Gso12g0058 Chr12 497127 504849 +
Lal Lal1g0029 Chr1 229470 240290 +
Lan Lan13g0036 Chr13 180612 187388 +
Lapu Lapu11g01092 Chr11 13054860 13063851 -
Lasa Lasa7g00910 Chr7 99854369 99859696 +
Lja Lja3g0074 Chr3 850278 856406 +
Psa Psa7g3658 Chr7 308488736 308493251 +
Pste Pste1g00341 Chr1 1221488 1227596 +
Pumo Pumo11g02253 Chr11 55097675 55105770 -
Rops Rops3g00101 Chr3 1246081 1255115 +
Seca Seca6g00151 Chr6 3780974 3794392 +
Spst Spst2g02947 Chr2 29234005 29240170 -
Ssu Ssu3g3278 Chr3 89220955 89227630 -
Tpr Tpr4g1206 Chr4 11590440 11598026 +
Tsu Tsu06g00945 Chr06 8556027 8564669 +
Vian Vian5g01834 Chr5 40501027 40507160 -
Vimu Vimu5g02799 Chr5 37425284 37431119 -
Viun Viun11g02977 Chr11 41163917 41171331 -
Vra Vra2g0077 Chr2 641682 648120 +
Pvu Pvu11g0079 Chr11 571364 573378 -
Acco Acco08g1580 Chr08 21269659 21271707 -
Accr Accr13g01543 Chr13 25827609 25828711 -
Adu Adu03g00999 Chr03 10252472 10254617 +
Aed Aed5g0072 Chr5 534991 535839 -
Ahy Ahy13g1221 Chr13 14148962 14151417 +
Aip Aip03g01336 Chr03 13668640 13670707 +
Amo Amo13g1595 Chr13 21543847 21545913 +
Apr Apr5g0645 Chr5 8902047 8903796 +
Arst Arst3g01286 Chr3 10683134 10685305 +
Bach Bach9g01440 Chr9 13010080 13012402 +
Bva Bva07g00877 Chr07 10678918 10681216 -
Car Car06g03094 Chr06 55537165 55539501 +
Cca Cca04g00083 Chr04 740119 742049 -
Dere Dere07g1564 Chr07 22376437 22380256 -
Dod Dod03g2524 Chr03 56777765 56779677 -
Gma Gma12g00069 Chr12 507058 508959 -
Gso Gso12g0059 Chr12 505645 507771 -
Lapu Lapu11g01091 Chr11 13052506 13054266 +
Lasa Lasa7g00911 Chr7 99860212 99861599 -
Lele Lele29g1066 Chr29 8209090 8211597 -
Lele Lele31g0470 Chr31 12604858 12607395 +
Lja Lja3g0076 Chr3 866407 868547 -
Mibi Mibi07g1502 Chr07 27090182 27092633 -
Pste Pste1g00355 Chr1 1251488 1253157 -
Pumo Pumo11g02252 Chr11 55094972 55096762 +
Seca Seca6g00152 Chr6 3796165 3799067 -
Spst Spst2g02946 Chr2 29229138 29230886 +
Ssu Ssu3g3277 Chr3 89216703 89218287 +
Sto Sto4g2490 Chr4 26269332 26272007 -
Tpr Tpr4g1207 Chr4 11601284 11604488 -
Tsu Tsu06g00946 Chr06 8565347 8568248 -
Vian Vian5g01832 Chr5 40478352 40487456 +
Vimu Vimu5g02797 Chr5 37410676 37412140 +
Viun Viun11g02973 Chr11 41148118 41150186 +
Vra Vra2g0079 Chr2 659225 661521 -
Pvu Pvu11g0080 Chr11 580089 580615 -
Pvu Pvu11g0081 Chr11 584312 586868 -
Ahy Ahy13g1220 Chr13 14115245 14119775 +
Car Car06g03088 Chr06 55042965 55048461 -
Mal Mal7g1191 Chr7 38349497 38353013 -
Prci Prci6g1766 Chr6 15008397 15011767 +
Ssu Ssu3g3275 Chr3 89183992 89187135 -
Sto Sto4g2486 Chr4 26248697 26251673 -
Pvu Pvu11g0082 Chr11 590517 593849 +
Adu Adu03g00997 Chr03 10225710 10230000 +
Cca Cca04g00084 Chr04 759423 762924 -
Dod Dod03g2525 Chr03 56794447 56797732 -
Gso Gso12g0061 Chr12 522954 526237 -
Lja Lja3g0082 Chr3 902620 906990 -
Prci Prci6g1765 Chr6 15008396 15011376 +
Ssu Ssu3g3272 Chr3 89153391 89156378 +
Sto Sto4g2485 Chr4 26239834 26242796 +
Tpr Tpr4g1208 Chr4 11630909 11634865 +
Tsu Tsu06g00951 Chr06 8623483 8626947 +
Vifa Vifa4g04913 Chr4 1545662962 1545665985 +
Vra Vra2g0080 Chr2 668747 671135 -
Pvu Pvu11g0083 Chr11 594776 595517 +
Pvu Pvu11g0084 Chr11 598003 601125 +
Aed Aed5g0078 Chr5 590539 594244 -
Aip Aip03g01335 Chr03 13642209 13646906 +
Amo Amo13g1593 Chr13 21509915 21514601 +
Apr Apr5g0644 Chr5 8846844 8859994 +
Car Car06g03087 Chr06 55006944 55010448 +
Cca Cca04g00085 Chr04 764782 768076 -
Gma Gma12g00071 Chr12 541037 544370 -
Gso Gso12g0063 Chr12 538216 541623 -
Prci Prci6g1764 Chr6 14994043 14995101 +
Pumo Pumo11g02250 Chr11 55042939 55064328 +
Sto Sto4g2480 Chr4 26189769 26192681 +
Vifa Vifa4g04914 Chr4 1545724264 1545727340 +
Pvu Pvu11g0085 Chr11 605283 606280 -
Vimu Vimu5g02791 Chr5 37384000 37384842 +
Vra Vra2g0084 Chr2 684539 686167 -
Pvu Pvu11g0086 Chr11 608154 610914 -
Vimu Vimu5g02790 Chr5 37380501 37381466 +
Vra Vra2g0085 Chr2 688401 695039 -
Pvu Pvu11g0087 Chr11 614676 615353 +