Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01238 ATGGTTGACACTAACAATGAGCCTCCACCACGTATTGAGGGAAAATTTACTGCTTTGGTGGTTTGCTGGCTTCTTGGCAATGGTGTTCTTTTCTCTTGGAACAGTATGCTAACAATAGTAGATTACTATGAATATTTGTTTCCGAACTATCATCCCTCTAGAGTGCTTACTCTTGTATATCAACCATTTGCATTTGGAACAATAGCAATACTAGCTTACAATGAGGCGAAAATCAATACAAGAAAGCGGAATCTAATTGGATATTCGCTCTTTTTCTTGAGCGTTTTGGCTGTGTTAATTTTGGATTTAGCAACATCTGGAAAAGGAGGAATCGGAACTTTCATCGGTGTATGCACAATAAGTGGTATATTTGGAATAGCAGATGCTTATACCCAAGGAGGAATGATTGGAGACTTGTCCTACATGCTTCCAGAATTCATGCAGTCCTTTCTTGCTGGTGAAGCAGCATCAGGTGCTCTAACATCGGCTTTGCGATTAATTACAAAAGCAATATTTAATAATTCTAAGGACGGTTTACGCAAAGGAGCGATTCTGTTCTTTGTTATATCAATAATCTTCGAGCTTCTTTGCGTTATTCTCTACGCATTTGTATTTCCTAAATTACCAATTGTGAAGTACTATCGTTCAAAAGCGGCATCAGAAGGATCAAAAACTGTTTCAGCTGATCTTGCTGCAGCCGGCATTCAGACCTCACCCAAAGGGGCTACCGAAGAATCAAAACAATTCGAGCGCAAAGGAAAGAAACAATTGTTATGGGAAAACATCGATTACGCAATTAATTTGTTTTTGATCTATGCGCTCACATTGTCTATTTTCCCTGGATTCTTATCAGAAGATACCGGAAAACACAGTTTAGGCACCTGGTATGCTCTTGTGTTAATTGCAATGTACAATGTGTGGGATCTTGTTGGAAGATATGTTCCGCTGATTAAAATCATAAATATGGAGTCCAGAAAGTTGATCACTACAGCGGTTGTTTCGCGATTTTTACTTGTACCGGCATTTTATTTCACTGCAAAGTATGGTACTCAAGGTTGGATGATTATGTTGACATCTTTCTTAGGGTTATCCAATGGTTACCTCACTGTTTGTGTTCTCACTTCAGCACCAAAAGGTTACAAGGGACCTGAACAAAATGCATTGGGAAATATTTTGGTGTTTTTTATTCTTGGAGGTATTTTTGCAGGGGTATTACTTGATTGGTTGTGGTTGATTGGTAAAGGATGGTGA 1251 0.3869 MVDTNNEPPPRIEGKFTALVVCWLLGNGVLFSWNSMLTIVDYYEYLFPNYHPSRVLTLVYQPFAFGTIAILAYNEAKINTRKRNLIGYSLFFLSVLAVLILDLATSGKGGIGTFIGVCTISGIFGIADAYTQGGMIGDLSYMLPEFMQSFLAGEAASGALTSALRLITKAIFNNSKDGLRKGAILFFVISIIFELLCVILYAFVFPKLPIVKYYRSKAASEGSKTVSADLAAAGIQTSPKGATEESKQFERKGKKQLLWENIDYAINLFLIYALTLSIFPGFLSEDTGKHSLGTWYALVLIAMYNVWDLVGRYVPLIKIINMESRKLITTAVVSRFLLVPAFYFTAKYGTQGWMIMLTSFLGLSNGYLTVCVLTSAPKGYKGPEQNALGNILVFFILGGIFAGVLLDWLWLIGKGW 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01238 416 Pfam Nucleoside transporter 125 410 IPR002259 GO:0005337|GO:0016020|GO:1901642
Trre7g01238 416 PIRSF ENT 4 414 IPR002259 GO:0005337|GO:0016020|GO:1901642
Trre7g01238 416 PANTHER EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 8 410 IPR002259 GO:0005337|GO:0016020|GO:1901642
Trre7g01238 416 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 124 146 IPR002259 GO:0005337|GO:0016020|GO:1901642
Trre7g01238 416 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 351 367 IPR002259 GO:0005337|GO:0016020|GO:1901642
Trre7g01238 416 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 388 412 IPR002259 GO:0005337|GO:0016020|GO:1901642
Trre7g01238 416 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 264 281 IPR002259 GO:0005337|GO:0016020|GO:1901642
Trre7g01238 416 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 152 172 IPR002259 GO:0005337|GO:0016020|GO:1901642
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01238 Trre-Chr7 8761607 8764708 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01238 5 414 Organic Solute Cotransporters AT4G05120 70.732 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01238 K15014 - gmx:100784933 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01238 7 8761607 8764708 Trre7g01238 7 8761607 8764708 ECH
Trre11g03995 11 53182675 53185194 Trre7g01238 7 8761607 8764708 PCT