Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1169 ATGGCCTCCATGCAGCGCCGGAAATCGCTCACATTGAACTGGGACGGTCTTCGAGACAACGATGAAGACGACGATCACTTCTTTGAGACGCGCGAACGCATGTCCTCCGCCACTCCGATCGATCTGGAAGCTTCTTCCTCCGACGAAGACGACGGCTTTGAAGAAAGCCGCATGTCGTTTAGCGCCAACATCTCTCCCAACCAATCCGAGCGAGTCAAACCTGTTCCGGCGCCCTTCGCCGCCTTTGGCTCCGAATACGACATGTGGATAGCATCTCCGGGATCAATCACGGAGCGAAGAAAACGATTACTTCTCGGTATGGGCCTGGACGAGAACAAAGAGGTCCTAAGAATCACAAGCATGGCTCTGGATCGCGCCATTTCGAAAAAATTCGAAAACGACCAAACCGATTATTTACCTTCAACACCAACAAGCACAAGTAAATCTTCTCCTTCTCCTCCTCAACCATATTCTTCCACTGTAAGTTCACAATCAGAGCAAAAACAACATAGAAGATCAAGAAAGCCGTCCATCATCCCCTTTGTTCTGGGTCGCTCGCGATCTGAAGGCGACATCGATTCCTTCTCGATGCCAAGATTCAGAAAAGAGGAATTCATCGGTAAAATCTCCAAGCAACGCCTCACGAGAACCTCATCGGACATGACATTTTCTCGCGGCGGGCATCGTCCGCAACAAGATGAATCCCTCGCTGCAGGGAAAGGTAAGGAAAGGCCGGCGAGGTCGCCACGGCAGCACGGCTCTAAAATGACGTCGGTGAAGTCTAACTGGGGACTAGGGGCTTTCTTCTTGATCAAGAATTTGGACACGGGAAAAGAGTTCATCGTCAACGAGTCAAGAGAAGACGGGACGTGGAACAGGCTAAGCGATCTGCAAACAGGGAAGAAATTAACAATGGAGGAATTCGAACGACACCTTGGTCATTCCCAGATGGTGAAAGAGTTAATGAGCCGTGACAAAGTCACCAGAAGTACTAGTGATAGTCTTGGATACGATAGAAAACTCTCAACACAACATTCATATTTCTCAAAGAGCTTAAGGAAGAGCAAAAGAACAGGGGCTGCTCTGTTGAAGAACATCAAGGGAGTGGCATCTGGGATAATCGGCGAGAAAGAAAGAGATGAACCACTGAAATCGTCATCGTTGTCAGCACAATTGTCCACTTCTGACCAGAAGGCCACGAAGAACGAACAATGGGTGAGAGTAAGACAGACTGGGAAATCCATGAAAGAGCTCTCAGCTGTGCATCTATGTCAGGAATTTCAAGCTCATGAAGGATGTATCTGGACGATCAGATTCAGTAACAATGGCCATTACATGGCGAGTTCAGGGGAAGACAAGGTGATTCACGTGTGGGAAGTTCAAGAATTCGAGGTGACATCTATGAAGCCAGAAGAAGGGAGCATCACTCCGATTCATACATCGTTACTTGGATCACCAGACCGAAATGGGAAGGAAGAAAGGAATGATAAGAAGAAGAAGGGGAAACATGGAAGCAAGAGAGGAACTAGTTTTACTATTCCTGATTATGTTCATGTCCCTGAAACTGTGTTCTCTTTCGCTGATAAACCTTATTGCTCTTTCCATGGCCATACCGGCGACGTTCTGGACCTGTCTTGGTCTAGATCTCAGTTACTGCTATCATCGTCAATGGATAAAACAGTGAGATTATGGGACATGGAAAGCAGGTCATGCTTGAAGGTGTTCACACACAGTGACTATGTAACGTGCGTGCAGTTCAACCCAATGGACGAAGACTATTTCATAAGTGGGTGTCTGGATGCTAAGGTGAGGATATGGAACGTATCTCAACGCTCTGTGGTGGATTGGATCGATATCCACGAAATGGTCACTGCTATTTCTTACACACCTGACGCTCAAGCTGCTTTTGTTGGTACTCATAAAGGAAGTTTTCGCATGTATAACATAGAAGATTGCAAAATGAGTCAAATAGGCACAGTTGAGCTTCGGAGAAAGAAGAAATCTCATTTAAGAAAGGTGACTGGTTTTCAGTTTGCTCCAAGTAATCCATCAGAAGTGCTTGTTACTTCTGCTGATTCCAGGATCAGAATTGTTGAAGATTCCAGAGTTGTACAAAAGTTTGTAGGTTTTCGAAATGCAGACAGCCAAATTTCAGGTTCGTTTAGTCCAAATGGAAGATACGTGATAAGTGCAAGTGAAGACTCTCAGGTATTTGTGTGGAAGAATGAAGGCCACGCAAAAGCCAGAAACCTGATTCTGACTCAATCCTACGAGCAATTCCAATGCAGAGACGTTTCAATAGCAATCCCATGGCCTCGAACCATCAAGGGTGACCCTTCAGTAGGACCAGCCATAAACTCAAAGAAACACTCAAAACATTCTTCAGCCCCTACTCCAGCTTCTTCTTCATGTGGATCTCCACTTCATCATTCTTCTAACAACAATAAGGGGACAATTTTGCCTCCTCTTCCCAAAAAGAACAACAAGCATAACCATGGCCCTGATACTGCTTCTCCTTCCCGGGAAGACGGACCCTCGGCGATTTCACGTACTTTGTCTGGGATTGGAGGGATTTCGTTCACTCATAGTGGTAGTAAGAGCAGGTGGTCCCCATTCTCTAGGAAGAGCAGTAGTAATAATGGTAACCATGTCATGGAAGAGGAAGACCCTGCAGCCATATCTCGAACCAGTTCTGGAATTGGGGATTCCTTTTCTTCTTCTGAGTCTTCTTCCATGAGGTATGGCGACTCGCCTTCCATGTCAGCTTCTGGTAGATCATCTTCTTCTGCATCTTGGTCAATGCAGTTTGATAATGGCCATGCCAACTCAGCTTGGGGGTTGGTGATTGTAACAGCTGGGTTCGGAGGTGAAATCAGCTTCTGTCCCATGACATGGCAGTTTTGTGAAAAAGTTGCAATTAATGCAGAGGAATCATATAAAGATAATGTCAAGTTTTTGTCTCTCATGACGTTGGCAATACTTGATCAAGAAGATCTTGACACTTTTTGTAAGGTATATAAAGCCAGTGGGCAGCAAGTACATGAAATTCAAACTTCATTGTTACTTGATATGCAGAGGATTTTAGATTCATTGAGCTATGTGTTTCTTCTTTTGGCTTCTTCAATTTAG 3129 0.4538 MASMQRRKSLTLNWDGLRDNDEDDDHFFETRERMSSATPIDLEASSSDEDDGFEESRMSFSANISPNQSERVKPVPAPFAAFGSEYDMWIASPGSITERRKRLLLGMGLDENKEVLRITSMALDRAISKKFENDQTDYLPSTPTSTSKSSPSPPQPYSSTVSSQSEQKQHRRSRKPSIIPFVLGRSRSEGDIDSFSMPRFRKEEFIGKISKQRLTRTSSDMTFSRGGHRPQQDESLAAGKGKERPARSPRQHGSKMTSVKSNWGLGAFFLIKNLDTGKEFIVNESREDGTWNRLSDLQTGKKLTMEEFERHLGHSQMVKELMSRDKVTRSTSDSLGYDRKLSTQHSYFSKSLRKSKRTGAALLKNIKGVASGIIGEKERDEPLKSSSLSAQLSTSDQKATKNEQWVRVRQTGKSMKELSAVHLCQEFQAHEGCIWTIRFSNNGHYMASSGEDKVIHVWEVQEFEVTSMKPEEGSITPIHTSLLGSPDRNGKEERNDKKKKGKHGSKRGTSFTIPDYVHVPETVFSFADKPYCSFHGHTGDVLDLSWSRSQLLLSSSMDKTVRLWDMESRSCLKVFTHSDYVTCVQFNPMDEDYFISGCLDAKVRIWNVSQRSVVDWIDIHEMVTAISYTPDAQAAFVGTHKGSFRMYNIEDCKMSQIGTVELRRKKKSHLRKVTGFQFAPSNPSEVLVTSADSRIRIVEDSRVVQKFVGFRNADSQISGSFSPNGRYVISASEDSQVFVWKNEGHAKARNLILTQSYEQFQCRDVSIAIPWPRTIKGDPSVGPAINSKKHSKHSSAPTPASSSCGSPLHHSSNNNKGTILPPLPKKNNKHNHGPDTASPSREDGPSAISRTLSGIGGISFTHSGSKSRWSPFSRKSSSNNGNHVMEEEDPAAISRTSSGIGDSFSSSESSSMRYGDSPSMSASGRSSSSASWSMQFDNGHANSAWGLVIVTAGFGGEISFCPMTWQFCEKVAINAEESYKDNVKFLSLMTLAILDQEDLDTFCKVYKASGQQVHEIQTSLLLDMQRILDSLSYVFLLLASSI 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1169 1042 PANTHER WD REPEAT DOMAIN 44 20 959 IPR040324 -
Lele37g1169 1042 ProSitePatterns Trp-Asp (WD) repeats signature. 446 460 IPR019775 -
Lele37g1169 1042 MobiDBLite consensus disorder prediction 235 250 - -
Lele37g1169 1042 SUPERFAMILY WD40 repeat-like 422 744 IPR036322 GO:0005515
Lele37g1169 1042 ProSiteProfiles Trp-Asp (WD) repeats profile. 427 468 IPR001680 GO:0005515
Lele37g1169 1042 ProSiteProfiles Trp-Asp (WD) repeats profile. 720 741 IPR001680 GO:0005515
Lele37g1169 1042 PRINTS G protein beta WD-40 repeat signature 446 460 IPR020472 -
Lele37g1169 1042 PRINTS G protein beta WD-40 repeat signature 594 608 IPR020472 -
Lele37g1169 1042 PRINTS G protein beta WD-40 repeat signature 552 566 IPR020472 -
Lele37g1169 1042 MobiDBLite consensus disorder prediction 896 928 - -
Lele37g1169 1042 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 574 609 - -
Lele37g1169 1042 MobiDBLite consensus disorder prediction 470 509 - -
Lele37g1169 1042 MobiDBLite consensus disorder prediction 779 928 - -
Lele37g1169 1042 MobiDBLite consensus disorder prediction 385 404 - -
Lele37g1169 1042 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 534 568 - -
Lele37g1169 1042 MobiDBLite consensus disorder prediction 134 166 - -
Lele37g1169 1042 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 427 461 - -
Lele37g1169 1042 ProSiteProfiles Trp-Asp (WD) repeats profile. 534 574 IPR001680 GO:0005515
Lele37g1169 1042 MobiDBLite consensus disorder prediction 133 182 - -
Lele37g1169 1042 MobiDBLite consensus disorder prediction 211 229 - -
Lele37g1169 1042 MobiDBLite consensus disorder prediction 842 884 - -
Lele37g1169 1042 MobiDBLite consensus disorder prediction 12 32 - -
Lele37g1169 1042 MobiDBLite consensus disorder prediction 787 821 - -
Lele37g1169 1042 MobiDBLite consensus disorder prediction 1 56 - -
Lele37g1169 1042 SMART WD40_4 527 565 IPR001680 GO:0005515
Lele37g1169 1042 SMART WD40_4 610 648 IPR001680 GO:0005515
Lele37g1169 1042 SMART WD40_4 568 607 IPR001680 GO:0005515
Lele37g1169 1042 SMART WD40_4 700 741 IPR001680 GO:0005515
Lele37g1169 1042 SMART WD40_4 420 459 IPR001680 GO:0005515
Lele37g1169 1042 SMART WD40_4 659 699 IPR001680 GO:0005515
Lele37g1169 1042 ProSitePatterns Trp-Asp (WD) repeats signature. 552 566 IPR019775 -
Lele37g1169 1042 MobiDBLite consensus disorder prediction 377 404 - -
Lele37g1169 1042 Gene3D - 411 765 IPR015943 GO:0005515
Lele37g1169 1042 ProSiteProfiles Trp-Asp (WD) repeats profile. 574 616 IPR001680 GO:0005515
Lele37g1169 1042 MobiDBLite consensus disorder prediction 211 257 - -
Lele37g1169 1042 Pfam WD domain, G-beta repeat 570 607 IPR001680 GO:0005515
Lele37g1169 1042 Pfam WD domain, G-beta repeat 720 741 IPR001680 GO:0005515
Lele37g1169 1042 Pfam WD domain, G-beta repeat 425 458 IPR001680 GO:0005515
Lele37g1169 1042 Pfam WD domain, G-beta repeat 532 565 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1169 Lele-ChrLele37 21184043 21187876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1169 533 741 Miscellaneous Gene Families AT5G08390 23.288 3.17e-12 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1169 37 21184043 21187876 Lele39g0244 39 1632751 1636586 hybridization