Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00821 ATGGGACGCCGGAAAACGATGACGATGGACTGGGACGGCCTTGGCGATGATGACGACGACGATGCCTTCTTCGAGTCATACAGCCGCCTCTCCACCGCCGCCCCCCTCGACCTCGCCTCCTCCTCCGACGATGACGACGACTTCGATGACCCTCGCCTCTCCTTCGCCTCAGCCATCTCCTCCTCTCCCTCGCGACAAAGCAGCGTCTCTCCCACCAAGGATGCTGCTCCAGATTACGGCATATGGATGGCGGGCCCCGTCTCAATCGACGAGCGGCGAAAGCGTTTGCTCCATGGCATGGGCCTGGACGAGGACAAAGAGTTCTCAAAAACCACGCCCGTGGAACTCGGTCAATCAGTTTCAAAGCCCACCAACCCCGTTTCCTCCCAAAAATCAACACTTCCGTCTACTTGCGCTAATCCCGTTACCGTTTCAACGACGACTGTTACCGATTCAACGACGCCGGTTTCCGAGACAACGACACCGGCTGCCGTTTCGACAGAGAAGATATCTTCGGGACACGCCTCTCATCAGTTAGTTCTTGTTCGTTCGCGATCCGAGGGAGACATCGAGTTGTTCTCATTGGAGGGGTCGCGAAGAGAAGATTTCATCGGAAAGTGTTCGAAGCAGCGGTTGACAAGAACCCGGACGGAGGTGTTCGTCCAGCGCGCTCCGCCGGGAACGAGAAACAGAGTGGTGTTGAGGGATTCCGACGAAGCACCGCAGTCCAAGCCGAAAAGCACGAAAGTTGGGGATCGGGAAGTGCGAGCGTTTTTCCTGATAAAGAACTTGGACACGGGGAAGGAGTTTATTGTGAACGAATGCACCGAAAGCGGTGCGTGGAACAGGCTGAGTGATTTGCAGACGGGGAAGCAGTTAACGATGGATGAATTTGAAACTTCGGTGGGGAAATCGCGAGTGGTTAACGAGTACATGCGACGTGGTACGAGGAGCGAGAGTTTGTCGCGGAAGCTGACTTCGAGTTCGTACATTTCGAGGAGTTTAAGGATGAGCAAGAGAAGAGGGGTTGCGTTTCTGAAGAACATAAAGGGCGTGGCGAGTGGGTTCATTGGGGAGAGAGAGGCTGCGGCGGCTAACGCAGCCGCTGCCTCCACGGCGGCGGAGAAGGGTCAGTGGGTGCGAGTGCGGCAGAGCGGGAAGTCGCACAAGGAGGTGTCGGCGTTGCATCTGTGTCAGGAGCTTCAGGGGCACGAGGGGTCGATTTGGACGATAAGGTTCAGTTTGGATGGGAGGTTTCTGGCGAGTGCGGGTGAGGACAAGGTGATACACGTGTGGGAAGTACAGGAGTGTGAGGTTATGTCGTTGAAGCTGGACGAGGGGAGTTTCACACCTCTTCACCCCTCCTCCCTTGCCTCCAACGACGGTAGTCCTTTCTCTCCGGCGGCGGCTGACAAGAAGAAGAAGGGCAAGTTCGGAAGCAAAAAAGGTCCCGCCATTCCTGACTTTGTTCATGTTCCTGAAACTGTCTTCTCACTCTCCGACAAACCCTTCTGCACTTTCCAAGGACATTCAGATGATGTTTTGGATTTGTCATGGTCTAGATCTAAGCAACTTCTCTCTTCTTCAATGGATAAAACGGTCAGATTATGGGACTTGGAGACTAAGACTTGCCTGTACAAGTTTCCCCATAGTGACTATGTAACCTGCATACAATTCAATCCTCTGAATGATGATATTTTCATAAGTGGTTCGCTGGATGCTAAGGTCAGAATATGGAGCATTCCTGAACGCCATGTTGTGGATTGGATTGATATCAATGAAATGGTGACTGCACTGGCCTTTACACCTGACGGTCAGGGTGCTTTTGTTGGTACCCACAAGGGTGGTTGTCGTACATATAGCACAAAAGATTGCAAACTAACTCAAACAGGAACAATTGAGATTCGAAACAAGAAATCCCTACTAAGAAAGGTCACAGGTTTTCAGTTTGTTCCTGGCAAACCATCAGAAATTCTTGTAACTTCAGCCGATTCCAGAATAAGAATATTGGAAGGTTCAGAAGTAGTTCAAAAGTACAAAGGTTTTCGAAATGCAAACAGTCAAATTGCAGCTTCCTTTACTCCAGATGGAAGATATATTATAAGTGCAAGTGAAGATTCTGAAGTATATGTGTGGAAGCGTGAAGAGCATAGAACTGCAGGCAGTGGAAAATTCAAAAGTGTGCTAGTTACTCGTGCTCACGAGCACTTCCAATGCAAAGACGTTTCAGTAGCAATACCATGGAATTGTCCCGTCAAAGGTGACCCGCTGCTAGGGCCAGTGGCTTCCAAAAGGCATTCAAAACGTTATCTGGGAGGTTCTATTGGTGGGGAAGAAACACCATCGCCATCTTCTGCAAACGGTAGTAAGAAAACTCTTCCACCACTTCCCAGGAAAAGCAATAGTCTTAACTTCGAAGGAGCTTCAAATTCCCCTAGGGAAGAAGCTGCAGTAATTTTCCATGCAGAATCAGGACTCGGAGATTCATTTGGTAACTGTAAGAGAACGATGCCTCGGTCTCCAATGAAAAACTGCCACACCGCAGAGGAAGATGAGCTTGAACCATTTTCACGCACAGATTCAGGATTTAGTGATTCTTTTAGAACTGCATCATCTTCATCTAGGTGCAGTGATGCACTTTCTTCAACTGCGTCATTTTCTTCAGCTTATTCATCATTGGACGGTGGCCATGTTTCCTCCACGGCATGGGGTTTGGTAATTGTGACAGCTGGGTTAGGAGGTGAGATCAAATGCTATCAAAATTTTGGGTTGCCTAGAAGGATTAGACAACCTCATCTTTTTGGAAGCTATAATAGTTTTACTAACATTTAG 2832 0.4944 MGRRKTMTMDWDGLGDDDDDDAFFESYSRLSTAAPLDLASSSDDDDDFDDPRLSFASAISSSPSRQSSVSPTKDAAPDYGIWMAGPVSIDERRKRLLHGMGLDEDKEFSKTTPVELGQSVSKPTNPVSSQKSTLPSTCANPVTVSTTTVTDSTTPVSETTTPAAVSTEKISSGHASHQLVLVRSRSEGDIELFSLEGSRREDFIGKCSKQRLTRTRTEVFVQRAPPGTRNRVVLRDSDEAPQSKPKSTKVGDREVRAFFLIKNLDTGKEFIVNECTESGAWNRLSDLQTGKQLTMDEFETSVGKSRVVNEYMRRGTRSESLSRKLTSSSYISRSLRMSKRRGVAFLKNIKGVASGFIGEREAAAANAAAASTAAEKGQWVRVRQSGKSHKEVSALHLCQELQGHEGSIWTIRFSLDGRFLASAGEDKVIHVWEVQECEVMSLKLDEGSFTPLHPSSLASNDGSPFSPAAADKKKKGKFGSKKGPAIPDFVHVPETVFSLSDKPFCTFQGHSDDVLDLSWSRSKQLLSSSMDKTVRLWDLETKTCLYKFPHSDYVTCIQFNPLNDDIFISGSLDAKVRIWSIPERHVVDWIDINEMVTALAFTPDGQGAFVGTHKGGCRTYSTKDCKLTQTGTIEIRNKKSLLRKVTGFQFVPGKPSEILVTSADSRIRILEGSEVVQKYKGFRNANSQIAASFTPDGRYIISASEDSEVYVWKREEHRTAGSGKFKSVLVTRAHEHFQCKDVSVAIPWNCPVKGDPLLGPVASKRHSKRYLGGSIGGEETPSPSSANGSKKTLPPLPRKSNSLNFEGASNSPREEAAVIFHAESGLGDSFGNCKRTMPRSPMKNCHTAEEDELEPFSRTDSGFSDSFRTASSSSRCSDALSSTASFSSAYSSLDGGHVSSTAWGLVIVTAGLGGEIKCYQNFGLPRRIRQPHLFGSYNSFTNI 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00821 943 ProSitePatterns Trp-Asp (WD) repeats signature. 525 539 IPR019775 -
Viun10g00821 943 Gene3D - 488 752 IPR015943 GO:0005515
Viun10g00821 943 Pfam WD domain, G-beta repeat 503 538 IPR001680 GO:0005515
Viun10g00821 943 Pfam WD domain, G-beta repeat 679 713 IPR001680 GO:0005515
Viun10g00821 943 Pfam WD domain, G-beta repeat 399 432 IPR001680 GO:0005515
Viun10g00821 943 Pfam WD domain, G-beta repeat 543 580 IPR001680 GO:0005515
Viun10g00821 943 ProSitePatterns Trp-Asp (WD) repeats signature. 420 434 IPR019775 -
Viun10g00821 943 MobiDBLite consensus disorder prediction 769 809 - -
Viun10g00821 943 PANTHER WD REPEAT DOMAIN 44 17 925 IPR040324 -
Viun10g00821 943 MobiDBLite consensus disorder prediction 108 170 - -
Viun10g00821 943 MobiDBLite consensus disorder prediction 34 79 - -
Viun10g00821 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 692 722 IPR001680 GO:0005515
Viun10g00821 943 MobiDBLite consensus disorder prediction 112 170 - -
Viun10g00821 943 MobiDBLite consensus disorder prediction 844 858 - -
Viun10g00821 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 581 - -
Viun10g00821 943 SUPERFAMILY WD40 repeat-like 395 718 IPR036322 GO:0005515
Viun10g00821 943 MobiDBLite consensus disorder prediction 778 809 - -
Viun10g00821 943 SMART WD40_4 394 433 IPR001680 GO:0005515
Viun10g00821 943 SMART WD40_4 672 713 IPR001680 GO:0005515
Viun10g00821 943 SMART WD40_4 582 621 IPR001680 GO:0005515
Viun10g00821 943 SMART WD40_4 635 671 IPR001680 GO:0005515
Viun10g00821 943 SMART WD40_4 500 538 IPR001680 GO:0005515
Viun10g00821 943 SMART WD40_4 541 580 IPR001680 GO:0005515
Viun10g00821 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 401 442 IPR001680 GO:0005515
Viun10g00821 943 MobiDBLite consensus disorder prediction 453 480 - -
Viun10g00821 943 MobiDBLite consensus disorder prediction 839 861 - -
Viun10g00821 943 Gene3D - 357 472 IPR015943 GO:0005515
Viun10g00821 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 401 435 - -
Viun10g00821 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 547 IPR001680 GO:0005515
Viun10g00821 943 MobiDBLite consensus disorder prediction 55 73 - -
Viun10g00821 943 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 507 541 - -
Viun10g00821 943 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 581 IPR001680 GO:0005515
Viun10g00821 943 PRINTS G protein beta WD-40 repeat signature 525 539 IPR020472 -
Viun10g00821 943 PRINTS G protein beta WD-40 repeat signature 420 434 IPR020472 -
Viun10g00821 943 PRINTS G protein beta WD-40 repeat signature 567 581 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00821 Viun-Chr10 9958227 9965134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00821 550 712 Miscellaneous Gene Families AT5G08390 25.150 8.32e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00821 K20241 - gmx:100779364 1115.91