Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2138 ATGGACCGCCGGAGGAAATCGCCAATAATGGATTTGGACGTTGAGGACGACGACGACCGATTCTTTGATCCCTCCGACCGCCTTTCCTGCGCTGTTCCTCTCGACTTCGTTTCCGCTTCCGAGGACGACGACGGCGATTTCGACGATGCAAGAATCTCCTTCTCGTCTGCGGTTTCCTCTGTTCCCGCCTTCAGAAACAGAGCATCAAGCATGCGAACTCCTCCGAGACTTTCCGTTTCTACCAGCGACTCCTTCGCCGATTATGGAATATGGATGGGTTCTCCCGATTCAATTAGCGAGCGGCGGAAGCGGTTGCTTCTCGGAATGGGACTCGACGAAAACATGGAGTTCTTGAAGCTACAGAGCACGAAGCTTGGCCATGGAGTTTCCAGGAGGTTTGAGAAAGGCAACAATCAATATCGTGTGCCGATTTCACCGGAGAGGACAACATTGGATCACGGCGGCGGCGGCGGCGGCGGCAAGGGTGATGATAGAGGTATTATAATTCGTACTACTACCGGTTCTTCTGGTTCTTCTGTTTTGGCAGAGCAAAAAACAGAGCAATCCTCTGTTTCCGTTGTTTTCGTTCGGTCACGGTCCGAGGGCGATATTGCATCGTTTTCAATGGAGAATAAAAGAAAAGAGGAGATGATTGGGAATGTCTCGAAGCAGCGCCTCACGAGGACTGCGACGGAGATACCTGTGCCACGCGGCAATGTTATTACTCATGCTAGGGCGGTGGTGAAAGACGGCAAGGAGGCAGAGGAACCGGAGGCGCACGACCAGAATGTTTCTGCACCCGCGGTGAATTCGGATGTAGCGCCTTTCTTCTTGATCAAGAATTTGGACACGGGGAACGAATTTATCGTGAATGAATGTGGCGAAAATGGCGCGTGGAATAGGTTGAGTGACTTGCAGACAGGAAGGAAGCTAACCATGGAAGAGTTCGAGAAAACCGTGGGACACTCAAGGGTGGTTAATAAGCTAATGAGGCGAGCGAAATTGGAAAACAATGAAGAATACTCGGGGGCTCTCGACTCGAGCCCTTCGATGTCTAGGAGCKTGAGGATGAGCATAAGCATGAGCAAGAGCAAGAGCAGGAGAGGATCATTCTTAAGGAACATAAAAGGGGTAGCCAGCGGGATCATTCGCGAAAGAGAAAGAGATTGTCCMGCGCACCTTCACCAGGAAGTGGTTTGGGAAGCAAAACCAACCATGAGTAGATGGGTTCGGGTGAAGCAGAGTGGTAAGTCTTACAAGGAGTTTTCTGCTCTGCATTTGTGCCAYGAGTTRCAAGCTCATGAGGGACTAATTTGGAAAATTAAGTTTAATTTAGATGGGAGGTTTTTGGCGAGTGCTGGCGAGGACAAGGTGGTTCATGTTTGGGAAGTCATTGAGCGTGACTGTATGGGATTCTCTAATTCTAATTCGGTGTCMGAAGAAGGYAGCGTTATGATTGCGTCGGCGCCWCTGTCTAGTGAGAAGAAGAAGWGCTTGTTTGGAAGTAAGAGGGATAAAGTTCCGGAATACGTTCATATGTCCGAAACTGTTTTCACCCTTTTGGAGGAACCGTATTGCTCCTTTCACGGTCATTTGGATGAAGTTTTGGATTTGGCATGGTCTAAGTCTGAGCTTCTTCTGTCATCGTCAATGGATAAAACAGTGAGGTTGTGGGACCTGGAAACTAAGAGTTGCTTAAAGGTGTTTCCTCATAATGACTACGTAACGTGCATACAGTTCAATCCTATAGACGAGGATTATTTCATAAGTGGCTGCCTCGACGGGAAGGTTAGAATATGGGACATACAGGAACGTCATGTCGTGGATTGGACTGATATCCATGAAATGGTTACTGCAATTGCATACACACCTGATGGTCAAGGTGTTTTAGTGGGCACAATGAAAGGGAGTTGTCGTACCTATAGTGTTGCAGATTGCAAATTAAGTCAAACAGGCACGGTGGAGATTCGACGCAAGAAGAAATCTCATCTCAGAAAAGTCACGGGTTTTCAGTTTGCCCCAGGAAATCCATCACAAGTACTTGTTACTTCAGCGGATGCCAGGGCAAGAATTGTTGAAGGTTCAGAGGTTGTTCAGAAGTTTAAGGGTTTTAAAAATGCAGACAGCCAAATCGCAGCTTCATTCAGTGCAAATGGAAAATTCATCATAAGTGCAAGTGATGATTCACAAGTGTTTATATGGAAGAACGAAGAGCAGAAAAGTGGAGGCACCGGAAAAGGTAGAAACATAGTGGTTACAAGGGCTCATGAGAACTTCCAATGCAAAGATGTTTTAATTGCAGTYGCATGGCCTTGCATGATCAGGGGTGATCCTCCACCAGTGAAATTGCAGACTTCGAAACGGATTTCGAAACGTTTTTCGGTGTCCTCGTCTAATAATGTAGTAGATGATACTACTAACGCTAGAAGATTCCTCCTTCCACCACTTCCCAAGAAGAAAAACAAGCAAGCKGCAGTAGATAGTGCTTCGAATTCTTCGGTCGAAGACCATGCCGCACTTTCGCATTCAGATTCTAGAAGAATGTTGCGGCATTTTTCAAAGAAGACTAATGGTCTTCACGTTACTCATGAAGAAGATGATAATCCTGAAGCCATCTCACGATCGAATTCAGGGATTAGCGATTCGTTTAGTTCGAGTTCAAGTTCGTCCTCAGCTATATATGGTTTTTCTTCAGCTTCATTTGGGTCATCATCTTTTTCTGAAGGTAGCCATGATTCCTCTGTAATTTATCCTTCGGCGTGGGGGTCGGTGATCGTGACAGCTGGAATTGGAGGCGAAATCCGTTTTGTTGCCCAGTGCGTTTCGTCCTCCTTCCAAATCGTCGACCCATTTGTTGGCGCCGAAGGTGGTGTTGGTCACGTGGAAGCTCGACGCCTGATCGGTGTCCAGCCAGAGACACTGATCACCGTGAAACTGACCTGA 2943 0.4706 MDRRRKSPIMDLDVEDDDDRFFDPSDRLSCAVPLDFVSASEDDDGDFDDARISFSSAVSSVPAFRNRASSMRTPPRLSVSTSDSFADYGIWMGSPDSISERRKRLLLGMGLDENMEFLKLQSTKLGHGVSRRFEKGNNQYRVPISPERTTLDHGGGGGGGKGDDRGIIIRTTTGSSGSSVLAEQKTEQSSVSVVFVRSRSEGDIASFSMENKRKEEMIGNVSKQRLTRTATEIPVPRGNVITHARAVVKDGKEAEEPEAHDQNVSAPAVNSDVAPFFLIKNLDTGNEFIVNECGENGAWNRLSDLQTGRKLTMEEFEKTVGHSRVVNKLMRRAKLENNEEYSGALDSSPSMSRSXRMSISMSKSKSRRGSFLRNIKGVASGIIRERERDCPAHLHQEVVWEAKPTMSRWVRVKQSGKSYKEFSALHLCHELQAHEGLIWKIKFNLDGRFLASAGEDKVVHVWEVIERDCMGFSNSNSVSEEGSVMIASAPLSSEKKKXLFGSKRDKVPEYVHMSETVFTLLEEPYCSFHGHLDEVLDLAWSKSELLLSSSMDKTVRLWDLETKSCLKVFPHNDYVTCIQFNPIDEDYFISGCLDGKVRIWDIQERHVVDWTDIHEMVTAIAYTPDGQGVLVGTMKGSCRTYSVADCKLSQTGTVEIRRKKKSHLRKVTGFQFAPGNPSQVLVTSADARARIVEGSEVVQKFKGFKNADSQIAASFSANGKFIISASDDSQVFIWKNEEQKSGGTGKGRNIVVTRAHENFQCKDVLIAVAWPCMIRGDPPPVKLQTSKRISKRFSVSSSNNVVDDTTNARRFLLPPLPKKKNKQAAVDSASNSSVEDHAALSHSDSRRMLRHFSKKTNGLHVTHEEDDNPEAISRSNSGISDSFSSSSSSSSAIYGFSSASFGSSSFSEGSHDSSVIYPSAWGSVIVTAGIGGEIRFVAQCVSSSFQIVDPFVGAEGGVGHVEARRLIGVQPETLITVKLT* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2138 980 ProSiteProfiles Trp-Asp (WD) repeats profile. 714 735 IPR001680 GO:0005515
Amo02g2138 980 MobiDBLite consensus disorder prediction 144 172 - -
Amo02g2138 980 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 568 603 - -
Amo02g2138 980 Gene3D - 415 769 IPR015943 GO:0005515
Amo02g2138 980 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 936 - -
Amo02g2138 980 MobiDBLite consensus disorder prediction 824 838 - -
Amo02g2138 980 ProSiteProfiles Trp-Asp (WD) repeats profile. 528 568 IPR001680 GO:0005515
Amo02g2138 980 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 431 464 - -
Amo02g2138 980 SUPERFAMILY WD40 repeat-like 425 749 IPR036322 GO:0005515
Amo02g2138 980 MobiDBLite consensus disorder prediction 812 880 - -
Amo02g2138 980 ProSitePatterns Trp-Asp (WD) repeats signature. 546 560 IPR019775 -
Amo02g2138 980 ProSiteProfiles Trp-Asp (WD) repeats profile. 568 603 IPR001680 GO:0005515
Amo02g2138 980 Pfam WD domain, G-beta repeat 526 559 IPR001680 GO:0005515
Amo02g2138 980 Pfam WD domain, G-beta repeat 564 601 IPR001680 GO:0005515
Amo02g2138 980 Pfam WD domain, G-beta repeat 429 462 IPR001680 GO:0005515
Amo02g2138 980 Pfam WD domain, G-beta repeat 700 735 IPR001680 GO:0005515
Amo02g2138 980 ProSiteProfiles Trp-Asp (WD) repeats profile. 431 464 IPR001680 GO:0005515
Amo02g2138 980 SMART WD40_4 694 735 IPR001680 GO:0005515
Amo02g2138 980 SMART WD40_4 653 693 IPR001680 GO:0005515
Amo02g2138 980 SMART WD40_4 424 463 IPR001680 GO:0005515
Amo02g2138 980 SMART WD40_4 521 559 IPR001680 GO:0005515
Amo02g2138 980 SMART WD40_4 562 601 IPR001680 GO:0005515
Amo02g2138 980 SMART WD40_4 603 642 IPR001680 GO:0005515
Amo02g2138 980 ProSitePatterns Trp-Asp (WD) repeats signature. 450 464 IPR019775 -
Amo02g2138 980 PRINTS G protein beta WD-40 repeat signature 546 560 IPR020472 -
Amo02g2138 980 PRINTS G protein beta WD-40 repeat signature 588 602 IPR020472 -
Amo02g2138 980 PRINTS G protein beta WD-40 repeat signature 450 464 IPR020472 -
Amo02g2138 980 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 528 562 - -
Amo02g2138 980 PANTHER WD REPEAT DOMAIN 44 7 936 IPR040324 -
Amo02g2138 980 MobiDBLite consensus disorder prediction 839 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2138 Amo-Chr2 70469002 70475498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2138 527 735 Miscellaneous Gene Families AT5G08390 23.502 1.40e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2138 K20241 - gmx:100779364 867.07