Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01568 ATGTGGAAGCTGAAGGTCGCAGAGGGAGAGAGTCCATGGCTTCGGACACGCAACAATCACCTTGGAAGACAGGTCTGGGAGTTCGATCCTACGCTTCAGCCACCGCAACAACTCCTCCAAATCGAAAAGGCTCGCCAGAGTTTCTACCATAATCGCTCCACTCAGAAACAGAGCGCCGATTTTCTTTTGCGCATGCAGTTTGCCCAAGAGAACCCGATGCACGAAGTCTTGCCCAAAGTGGAAGTTGAAGGCACCGAGGATGTAACCGAAGAGGTCGTGACGAGAACGTTAAGAAGGGCAACGAGTTTCCTTTCAACTCTTCAGAGTCACGATGGACACTGGCCAGGTGATTACGGAGGTCCCATGTTCATGATTCCTTCTTTGATAATTGCTCTGTATATCAGCGGGGCTCTGAATTTAGTCTTGACAGAAGAACATACAAAGGAAATTCGGCGTTTTATCTATAATCATCAAAACGAGGATGGTGGGTGGGGTTTGCATATTGAAGGTTCAAGCACAATGTTTGGCTCTGTTTTGAGTTATGTTGCTCTGAGATTGCTTGGTGAGGGAGCAAGTGGAGGACAAAGGGAAATGGCGATTGCACGTGACTGGATTCAAGGGCATGGTGGAGCCACTTTTATAACTTCCTGGGGGAAGATGTGGCTATCAGTCCTTGGAGTGTATGAATGGTCAGGAAATAATCCTTTACCCCCTGAAGTATGGCTCCTTCCATACATGCTTCCATTTCATCCAGGAAGGATGTGGAATCACTGCCGGATGGTGTATTTGCCAATGTCGTACTTATATGCGAAGAGATTTGTTGGATCAATCACACCTATAGTTTTGTCTTTGAGAAAAGAGCTTTATACCATACCTTATGCGGATATCGACTGGGACCAGGCTCGTAATTTGTGTGCAAAGGAAGACTTGTACTATCCTCACTCACATGTGCAGGATCTTCTCTGGGGAACTCTACACAACATCATTGAGCCTATTTTGATGCATTTTCCAGGAAATAAGTTGAGAGAAAAGGCTCTTAAGGCTGTAATGGAGCGTATACATTATGAAGATGAGACTAGTCATTATATTTGCTTAGGTCCTGTAAACAAGGTGTTAAATATGTTGTGTTGTTGGGTGGAAGATCCAAATTCTGAGGCATTCAAGTTACATCTTCCAAGGATTCATGATTATCTATGGATTGCTGAAGATGGTCTCAAAATGAAGGGATACAATGGAAGTCAACTATGGGATACTGCATTTATTGTCCAAGCAATTATTTCAACTAACCTAGCAGAAGAATACGGTCCAACTCTAAGAAAAGCTCATACATACATCAAGAATTCACAGATTTTAGAAGATTGTCCGGGTGATCCAAATAAATGGTTTCGTCATATTTCAAAAGGCAGTTGGCCTTTTTCGACTGCAGATAATAGATGGCCCACTTCTGATTGCACCGCTGAAGGACTAAAAGCTGTTCTCTTACTCTCCAAGATGGCATCAGAGATTGTTGGTGAGCCGTTGGATGCAAATCGATTATATGATGCAGTGAATATCCTTCTCTCATTACAGAATAAAGATGGAGGCTTTCCAACGTATGAGCTCACACGATCTTATAGCTGGATGGAGATAATCAATCCCTCTGAAACATTTGGCGACATAATTCTCGATTATCCTTATGTGGAATGCACCTCTGCAGCTATTGAAGCTTTGACATTATTTAGGAAATTTTATCCTGAACATCGTCCACAAGAAATACAAGGCTGTGTTGAAAAGGCTGTTGCCTTTATTCAGAAAATACAATCATCAGATGGCTCATGGTATGGTTCATGGGGAATTTGCTTCACTTATGGAACATGGTATGGAGTAAAAGGGTTGGTAAGCAGTGGAAGGAGTTTCAGTGATTGCTCAAGCATCAGAAAAGCTTGTGAGTTTTTGCTGTCTAAGCAACTCCCTTCTGGTGGCTGGGGAGAGAGTTATCTGTCTAGTCAAAACAAGGTATATACAAATCTTGAAGGCAACAAGCCTCATATAGTAAACACTGGGTGGGCTATGCTGGCTCTAATAGACGCTGGACAGGCAGAGAGAGATCCAACACCACTCCACAAAGCTGCTGTGTACTTGATAAATTCTCAGATGGAGAATGGTGACTATCCCCAGCAGGAAATAATGGGAGTGTTCAACAAGAATTGCATGATCACATTTGCGGCATACAGAAGCATATTTCCTATATGGGCCTTAGGAGAATACCGACGTCATGTATTGCATGCACTTTAA 2274 0.4305 MWKLKVAEGESPWLRTRNNHLGRQVWEFDPTLQPPQQLLQIEKARQSFYHNRSTQKQSADFLLRMQFAQENPMHEVLPKVEVEGTEDVTEEVVTRTLRRATSFLSTLQSHDGHWPGDYGGPMFMIPSLIIALYISGALNLVLTEEHTKEIRRFIYNHQNEDGGWGLHIEGSSTMFGSVLSYVALRLLGEGASGGQREMAIARDWIQGHGGATFITSWGKMWLSVLGVYEWSGNNPLPPEVWLLPYMLPFHPGRMWNHCRMVYLPMSYLYAKRFVGSITPIVLSLRKELYTIPYADIDWDQARNLCAKEDLYYPHSHVQDLLWGTLHNIIEPILMHFPGNKLREKALKAVMERIHYEDETSHYICLGPVNKVLNMLCCWVEDPNSEAFKLHLPRIHDYLWIAEDGLKMKGYNGSQLWDTAFIVQAIISTNLAEEYGPTLRKAHTYIKNSQILEDCPGDPNKWFRHISKGSWPFSTADNRWPTSDCTAEGLKAVLLLSKMASEIVGEPLDANRLYDAVNILLSLQNKDGGFPTYELTRSYSWMEIINPSETFGDIILDYPYVECTSAAIEALTLFRKFYPEHRPQEIQGCVEKAVAFIQKIQSSDGSWYGSWGICFTYGTWYGVKGLVSSGRSFSDCSSIRKACEFLLSKQLPSGGWGESYLSSQNKVYTNLEGNKPHIVNTGWAMLALIDAGQAERDPTPLHKAAVYLINSQMENGDYPQQEIMGVFNKNCMITFAAYRSIFPIWALGEYRRHVLHAL 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01568 757 FunFam Terpene cyclase/mutase family member 118 411 - -
Phco1g01568 757 Pfam Squalene-hopene cyclase C-terminal domain 413 751 IPR032696 -
Phco1g01568 757 NCBIfam squalene/oxidosqualene cyclases 96 751 IPR018333 GO:0005811|GO:0016104|GO:0016866
Phco1g01568 757 PANTHER TERPENE CYCLASE/MUTASE FAMILY MEMBER 1 754 IPR018333 GO:0005811|GO:0016104|GO:0016866
Phco1g01568 757 FunFam Terpene cyclase/mutase family member 488 728 - -
Phco1g01568 757 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 339 754 IPR008930 -
Phco1g01568 757 Gene3D - 386 755 - -
Phco1g01568 757 CDD SQCY_1 97 749 IPR018333 GO:0005811|GO:0016104|GO:0016866
Phco1g01568 757 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 120 407 IPR008930 -
Phco1g01568 757 SFLD Prenyltransferase Like 2 70 752 IPR018333 GO:0005811|GO:0016104|GO:0016866
Phco1g01568 757 Pfam Squalene-hopene cyclase N-terminal domain 98 400 IPR032697 -
Phco1g01568 757 Gene3D - 39 220 - -
Phco1g01568 757 ProSitePatterns Terpene synthases signature. 603 617 IPR002365 GO:0016866
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01568 Phco-Chr1 52995613 53011441 Transposed