Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0244 ATGGCCCCCATGCAGCGCCGGAAATCGCTCACATTGAACTGGGACGGTCTCCGAGACAACGATGAAGACGACGATCACTTCTTTGAGACGCGCGAACGCATGTCCTCCGCCACTCCGATCGATCTGGAAGCTTCTTCCTCCGACGAAGACGACGGCTTTGAAGAAAGCCGCATGTCGTTTAGCGCCAACATCTCTCCCAACCAATCCGAGCGAGTCAAACCTGTTCAGGCACCCTTCGCCGCCTTGGGCTCCGAATACGACATGTGGATAGCATCTCCGGGATCAATCACGGAGCGAAGAAAACGATTACTTCTCGGTATGGGCCTGGACGAGAACAAAGAGGTCCTAAGAATCACAAGCATGGCTCTGGATCGCGCCATTTCGAAAAAATTCGAAAACGACCAAACCGATTATTTACCTTCAACACCAACAAGCACAAGTAAATCTTCTCCTTCTCCTCCTCATCCATCTTCTTCCACTGTAAGTTCACAAGCAGAGCAAAAACAACCTAGAAGATCAAGAAAGCCGTCCATCATCCCCTTTGTTTTGGGTCGCTCGCGATCTGAAGGCGACATCGATTCCTTCTCGATGCCAAGATCCAGAAAAGAGGAATTCATCGGTAAAATCTCCAAGCAACGCCTCACGAGAACCTCATCGGACGTGACATTTTCTCGCGGCGGGCATCGTCCGCACCAAGATGAATCCCGCGCTTCAGGGAAAGGTAATGAAAGGCCGGCGAGGTCGCCACGGCAGCTCGGCTCTAAAATGACGTCGGTGAAGTCTAACTGGGGACTAGGGGCTTTCTTCTTGATCAAGAATTTGGACACGGGAAAAGAGTTCATCGTCAACGAGTCAAGAGAAGATGGGACGTGGAACAGGCTAAGCGATCTGCAAACAGGGAAGAAATTAACAATGGAGGAATTCGAAAGACACCTTGGTCATTCCCAGATGGTGAAAGAGTTAATGAGCCGTGACAAAGTCACCAGAAGTACTAGTGATATTCTTGGATACGATAGAAAACTCACAACACAACATTCATATTTCTCAAAGAGCTTAAGGAAGAGCAAAAGAACAGGGGCTGCTCTATTGAAGAACATCAAGGGAGTGGCATCTGGGATCATTGGCGAGAAAGAAAGAGATGAACCACTGAAATCGTCATCGTCGTCAGCACAATTGTCAACTTCTGAGCAGAAGGCCACGAAGAACGAACAATGGGTGAGAGTAAGACAGACTGGGAAATCCATGAAAGAGCTCTCAGCTGTGCATCTATGCCAGGAATTTCAAGCTCATGAAGGATGTATCTGGACGATCAGATTCAGTAACAATGGCCATTACATGGCGAGTTCAGGGGAAGACAAGGTGATTCACGTGTGGGAAGTTCAAGAATTCGAGGTGACATCGATGAAGCCAGAAGAAGGGAGCATCACTCCTATTCATCCATCTTTACTTGGATCACCAGACCGAAATGGGAAGGAAGAAAGGAATGAGAAGAAGAAGAAGGGGAAACATGGAAGCAAGAGAGGAACTAGTTTTACTATTCCTGATTATGTTCATGTCCCTGAAACTGTGTTCTCTTTCGCGGATAAACCTTATTGCTCTTTCCATGGCCATACCGGCGACGTTCTGGACCTGTCTTGGTCTAGATCTCAGTTCAACCCAATGGATGAAGACTATTTCATAAGTGGGTGTCTGGATGCTAAGGTGAGGATATGGAACGTATCTCAACGCTCTGTGGTGGATTGGATTGATATCCACGAAATGGTCACTGCTATTTCTTACACACCTGACGCTCAAGCTGCTTTTGTTGGTACTCATAAAGGAAGTTTTCGCATGTATAACATAGAAGATTGCAAAATGAGTCAAATAGGCACAGTTGAGCTTCGGAGAAAGAAGAAATCTCATTTAAGAAAGGTGACTGGTTTTCAGTTTGCTCCAAGTAATCCATCAGAAGTGCTTGTTACTTCTGCTGATTCCAGGATCAGGATTGTTGAAGATTCCAGAGTTGTACAAAAGTTTGTAGGTTTTCGAAATGCAAACAGCCAAATTTCAGGTTCGTTTAGTCCAGATGGAAGATACGTGATAAGTGCAAGTGAAGACTCTCAGGTATTTGTGTGGAAGAATGAAGGCCATGCAAAAGCCAGAAACCTGATTCTGACTCAATCCTACGAGCAATTCCAATGCAGAGACGTTTCAATAGCAATCCCATGGCCTCGAACCATCAAGGGCGACCCTTCAGTAGGACCAGCCATAAACTCAAAGAAACACTCAAAACATTCTTCAGCCCCTACTCCAGCTTCTTCTTCATGTGGATCCCCACTTCATCATTCTTATAACAACAATAAGGGGACAATTTTGCCTCCTCTTCCCAAAAAGAACAACAAGCATAACCATGCCCCTGATACTGCTTCTCCTTCCCGGGAAGACGAACCCTCGGCGATTTCACGTACCTTGTCTGGGATTGGAGGGATTTCGTTCACTCATAGTGGTAGTAAGAGCAGGTGGTCCCCATTCTCTAGGAAGAGTAGTAGTAATAATGGTAACCATGTCATGGAAGAGGAAGACCCTGCAGCCATATCTCGAACCAGTTCTGGAATTGGGGATTCCTTTTCTTCTTCTGAGTCTTCTTCCATGAGGTATGGCGATTCGCCTTCCATGTCAGCTTCTGGTAGATCATCTTCTTCTGCATCTTGGTCAATGCAGTTTGATAATGGCCATGCCAACTCAGCTTGGGGGTTGGTGATTGTAACAGCTGGGTTCGGAGGTGAAATCAGGAATCATATAAAGATAATGTCAAGTTTTTGTCTCATGACATTGGCAATACTTGAGCAAGAAGATCTTGACACTTTTTGTAAGGTATATAAAGCCAGTGGGCAGCAAGTACATGAAATTCAAACTTCATTGGTACTTGATAAGCAGAGGATTTTAGATTCATTGAGCTATGTGTTTCTTCTTTTGGCTTCTTCGATTTGGAGATTTTGA 2979 0.4559 MAPMQRRKSLTLNWDGLRDNDEDDDHFFETRERMSSATPIDLEASSSDEDDGFEESRMSFSANISPNQSERVKPVQAPFAALGSEYDMWIASPGSITERRKRLLLGMGLDENKEVLRITSMALDRAISKKFENDQTDYLPSTPTSTSKSSPSPPHPSSSTVSSQAEQKQPRRSRKPSIIPFVLGRSRSEGDIDSFSMPRSRKEEFIGKISKQRLTRTSSDVTFSRGGHRPHQDESRASGKGNERPARSPRQLGSKMTSVKSNWGLGAFFLIKNLDTGKEFIVNESREDGTWNRLSDLQTGKKLTMEEFERHLGHSQMVKELMSRDKVTRSTSDILGYDRKLTTQHSYFSKSLRKSKRTGAALLKNIKGVASGIIGEKERDEPLKSSSSSAQLSTSEQKATKNEQWVRVRQTGKSMKELSAVHLCQEFQAHEGCIWTIRFSNNGHYMASSGEDKVIHVWEVQEFEVTSMKPEEGSITPIHPSLLGSPDRNGKEERNEKKKKGKHGSKRGTSFTIPDYVHVPETVFSFADKPYCSFHGHTGDVLDLSWSRSQFNPMDEDYFISGCLDAKVRIWNVSQRSVVDWIDIHEMVTAISYTPDAQAAFVGTHKGSFRMYNIEDCKMSQIGTVELRRKKKSHLRKVTGFQFAPSNPSEVLVTSADSRIRIVEDSRVVQKFVGFRNANSQISGSFSPDGRYVISASEDSQVFVWKNEGHAKARNLILTQSYEQFQCRDVSIAIPWPRTIKGDPSVGPAINSKKHSKHSSAPTPASSSCGSPLHHSYNNNKGTILPPLPKKNNKHNHAPDTASPSREDEPSAISRTLSGIGGISFTHSGSKSRWSPFSRKSSSNNGNHVMEEEDPAAISRTSSGIGDSFSSSESSSMRYGDSPSMSASGRSSSSASWSMQFDNGHANSAWGLVIVTAGFGGEIRNHIKIMSSFCLMTLAILEQEDLDTFCKVYKASGQQVHEIQTSLVLDKQRILDSLSYVFLLLASSIWRF 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0244 992 MobiDBLite consensus disorder prediction 469 509 - -
Lele39g0244 992 MobiDBLite consensus disorder prediction 385 403 - -
Lele39g0244 992 MobiDBLite consensus disorder prediction 192 210 - -
Lele39g0244 992 ProSitePatterns Trp-Asp (WD) repeats signature. 446 460 IPR019775 -
Lele39g0244 992 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 427 461 - -
Lele39g0244 992 PANTHER WD REPEAT DOMAIN 44 550 926 IPR040324 -
Lele39g0244 992 MobiDBLite consensus disorder prediction 744 891 - -
Lele39g0244 992 MobiDBLite consensus disorder prediction 226 243 - -
Lele39g0244 992 ProSiteProfiles Trp-Asp (WD) repeats profile. 534 581 IPR001680 GO:0005515
Lele39g0244 992 MobiDBLite consensus disorder prediction 807 849 - -
Lele39g0244 992 ProSiteProfiles Trp-Asp (WD) repeats profile. 427 468 IPR001680 GO:0005515
Lele39g0244 992 MobiDBLite consensus disorder prediction 134 167 - -
Lele39g0244 992 MobiDBLite consensus disorder prediction 861 891 - -
Lele39g0244 992 MobiDBLite consensus disorder prediction 30 56 - -
Lele39g0244 992 SUPERFAMILY WD40 repeat-like 424 709 IPR036322 GO:0005515
Lele39g0244 992 SMART WD40_4 575 613 IPR001680 GO:0005515
Lele39g0244 992 SMART WD40_4 665 706 IPR001680 GO:0005515
Lele39g0244 992 SMART WD40_4 527 572 IPR001680 GO:0005515
Lele39g0244 992 SMART WD40_4 624 664 IPR001680 GO:0005515
Lele39g0244 992 SMART WD40_4 420 459 IPR001680 GO:0005515
Lele39g0244 992 Gene3D - 525 731 IPR015943 GO:0005515
Lele39g0244 992 MobiDBLite consensus disorder prediction 211 225 - -
Lele39g0244 992 ProSiteProfiles Trp-Asp (WD) repeats profile. 685 706 IPR001680 GO:0005515
Lele39g0244 992 MobiDBLite consensus disorder prediction 752 786 - -
Lele39g0244 992 MobiDBLite consensus disorder prediction 377 403 - -
Lele39g0244 992 MobiDBLite consensus disorder prediction 130 257 - -
Lele39g0244 992 Gene3D - 369 496 IPR015943 GO:0005515
Lele39g0244 992 Pfam WD domain, G-beta repeat 685 706 IPR001680 GO:0005515
Lele39g0244 992 Pfam WD domain, G-beta repeat 425 458 IPR001680 GO:0005515
Lele39g0244 992 Pfam WD domain, G-beta repeat 532 572 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0244 Lele-ChrLele39 1632751 1636586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0244 550 706 Miscellaneous Gene Families AT5G08390 23.636 2.30e-06 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1169 37 21184043 21187876 Lele39g0244 39 1632751 1636586 hybridization
Lele38g1057 38 21925834 21929229 Lele39g0244 39 1632751 1636586 hybridization