Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0372 ATGCAACCCCGGAAATCCCTCACAGTGAACTGGGACGGTCTCGGAGACGACGACGAAGACGACGACCTCTTCTTCGAGACGCGCGAACGTATGTCCTCCGCCGCTCCGATTGACTTGGAAGCTTCTTCTTCCGATGAAGAAGACGACGGTGGTGACTTCGAAGAGAGCCGCATGTCGTTCAGCTCCAACATCTCTCCCAATAAGCAATCCGAGAGAGTCAAGCCTTTTGCGGTGGCCTTCAATGCATTGAGCTCCGACTACGACATGTGGATGGCGGCTCCGGGATCAATCACAGAGCGAAGAAAAAGATTACTTCTCGGAATGGGACTGAATGAGAACAGAGATTTCTTACGAATCACAAGCATGGCTCTGGATCACGCAATTTCAAAAAAATTCGAAAATGACCAAATCGATTGTTCACCTTCAACACCAACAACAAGCACAACTAAATCTCCTCCTCCTCCTCCTCATTCATCTTCTTCCCCTGTAAGTTCAAAAACAGAGGAAAACCAACCTAGAAAATCGAGAAAGCCGTCGATAATCCCCTTTGTTCTCGGTCGCTCGCGATCTGAAGGTGACATCACTTCCTTCTCAATGCCAAGATGTAGAAAAGAGGAATTCATAGGAAAAATCTCCAAGCAACGCCTCACGAGAACCTCGTCGGATATGACATTCTGCCGCGGCGGCGGCGGCCCGCACCAAGACGAATCCCAAGTCGCTGCCATGGCAAAATGTAAGGAAAGGCGGCACGGCTCGAAGATGACGTCGGTGAAGTCTAAATGGGGATTGGGAGCTTTCTTCTTGATCAAGAATTTGGACACAGGAAAAGAATTCATCGTGAACGAGTCTAGAGAAGACGGGATGTGGAACAGACTAAGGGATCTGCAAACAGGGAAGAAACTAACAATGGAGGAATTCGAACGCCACCTCGGGTATTCTCCGATGGTGAAAGAGCTAATGAGTCGTGAGAAAGTGACCAGAAGTGCAAGCGACAGTCTCGGATACGAGAGAAAACTCACAACACATCACTCATATTTCTCAAAGAGCTTAAGGAAGAGCAAGAGAACAGGGGCTGCTCTGTTGAAGAACATAAAGGGGGTTGCTTCTGGTTTCATCGGAGAAAGAGAAAGAGACGAAATACAGTTGTCAAATTCTGAGCAGAAGCCGGCGACGACGATGACGACTAAGAACGAACAGTGGGTGAGAGTGAGACAGAGTGGAAAACCCATAAAGGAGCTCTCAGCTCTGCATCTATGTAAGGAATTTCAAGCTCATGAAGGATGTATATGGACCATCAAGTTCAGTAATGACGGTCATTACATGGCAAGTTCAGGGGAAGACAGAGTGATTCATGTTTGGGAAGTTCAAGAATTGGAGGTGACATCTATGAAGACAGAGGAAGGGAGTCTTACTCCGATTCATCCGTCATTACTCGGATCGCCGGAACGAAATGGGAAGAAAGGGAAACATGGGAGCAAGAGAGGAAGTAGTTTTACAGTTCCTGATTATGTTCATATCCCTGAAACTGTCTTCTCTTTCTCTGACAAACCTCATTGCTCTTTCCATGGCCATTCCGACGACGTTTTGGACCTATCTTGGTCAAGATCTCAGTTACTTCTATCTTCATCAATGGATAAAACAGTGAGATTATGGGACATGGAAAGCAGGGCCTGCTTGAAGGTGTTCACCCACAGTGACTATGTAACGTGTGTACAGTTCAATCCGATGGACGAAGAGTATTTCATAAGTGGATGTTTGGATGCTAAAGTAAGGATATGGAATATACCAGAACGCTTTGTGGTGGATTGGATTGATACCCATGAGATGGTCACTGCTATTTCTTACACTCCTGACGCTCAAGCTGCTTTTGTTGGTACTCATAAAGGAACTTGTCGCGTGTATAGCTTAGAAGATGGCAAAATAAGTCAAATGGGCACAATTGAGCTTCGGAGAAAGAAGAAATCTCATTTAAGAAAGGTGACTGGTTTTCAGTTTGCTCCAACTAATCCATCAGAAGTGCTTGTTACTTCAGCTGATTCCAGGATCAGAATTGTACAAGATTCCAGAGTTGTTCATAAGTTTGTAGGTTTCCGAAATGCAAACAGCCAAATTTCAGGATCATTTAGCCCAGATGGAAGATATGTGATAAGTGCAAGTGAAGACTCAAATGTATATGTGTGGAAAAATGAAGGCCATGCAAAAGCCAGAAACATGATTCTGACTCAATCCCATGAACAATTCCAATGCAGAGACGTGTCGGTAGCGATTCCATGGACTCGAACCATTAAAGGCGACCCTCCGGTAGGGCCGGCAGTCCTCCACCACCACTCGAAGAGACACTCGAAACATTCTTCGGCCTCCAATCAGCCAGCTTCCTCTTTTTCTTCTTCTTCATCATGTAGATCTCCACTTCACCATCATTTTCATAAGGGAACAATTTTGCCTCCTCTTATTCCCAAAAAGAAAAACAACCATCACCATAATCATAACTTTGGCTCTGAAACCATCTCTCCTTCGGCGATCTCTCGTACCATGTCAGGGATTAATGGTAGCAAGAGCAGGTGGTCCCCATTTTCTAGGAATAAGAGTGGTAACAATGGTGATCACCACCATGTCATCATGGCGGAAGAGGATGACCCGGCAGCCATATCTCGCACTAATTCTGGATTTGGCGACTCGTTTTCTTCTTCTGATTCTGGTTCCATTAGGTATGGCGATTCGCCTTCGATTTCTGCTTCTGCTAGGTCATCATCTTCAGGATCTTGGTCAATGCAGTATGATAATGGTCATGCCAATTCAAGTTCTCATGCTTCAGCTTGGGGTTTGGTGATTGTAACAGCTGGGTATGGAGGTGAAATCAGGTGTTATCAAAATTTTGGGTTGCCTAGGAAAGTATGA 2898 0.4548 MQPRKSLTVNWDGLGDDDEDDDLFFETRERMSSAAPIDLEASSSDEEDDGGDFEESRMSFSSNISPNKQSERVKPFAVAFNALSSDYDMWMAAPGSITERRKRLLLGMGLNENRDFLRITSMALDHAISKKFENDQIDCSPSTPTTSTTKSPPPPPHSSSSPVSSKTEENQPRKSRKPSIIPFVLGRSRSEGDITSFSMPRCRKEEFIGKISKQRLTRTSSDMTFCRGGGGPHQDESQVAAMAKCKERRHGSKMTSVKSKWGLGAFFLIKNLDTGKEFIVNESREDGMWNRLRDLQTGKKLTMEEFERHLGYSPMVKELMSREKVTRSASDSLGYERKLTTHHSYFSKSLRKSKRTGAALLKNIKGVASGFIGERERDEIQLSNSEQKPATTMTTKNEQWVRVRQSGKPIKELSALHLCKEFQAHEGCIWTIKFSNDGHYMASSGEDRVIHVWEVQELEVTSMKTEEGSLTPIHPSLLGSPERNGKKGKHGSKRGSSFTVPDYVHIPETVFSFSDKPHCSFHGHSDDVLDLSWSRSQLLLSSSMDKTVRLWDMESRACLKVFTHSDYVTCVQFNPMDEEYFISGCLDAKVRIWNIPERFVVDWIDTHEMVTAISYTPDAQAAFVGTHKGTCRVYSLEDGKISQMGTIELRRKKKSHLRKVTGFQFAPTNPSEVLVTSADSRIRIVQDSRVVHKFVGFRNANSQISGSFSPDGRYVISASEDSNVYVWKNEGHAKARNMILTQSHEQFQCRDVSVAIPWTRTIKGDPPVGPAVLHHHSKRHSKHSSASNQPASSFSSSSSCRSPLHHHFHKGTILPPLIPKKKNNHHHNHNFGSETISPSAISRTMSGINGSKSRWSPFSRNKSGNNGDHHHVIMAEEDDPAAISRTNSGFGDSFSSSDSGSIRYGDSPSISASARSSSSGSWSMQYDNGHANSSSHASAWGLVIVTAGYGGEIRCYQNFGLPRKV 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0372 965 PRINTS G protein beta WD-40 repeat signature 581 595 IPR020472 -
Alju05g0372 965 PRINTS G protein beta WD-40 repeat signature 539 553 IPR020472 -
Alju05g0372 965 PRINTS G protein beta WD-40 repeat signature 441 455 IPR020472 -
Alju05g0372 965 MobiDBLite consensus disorder prediction 784 802 - -
Alju05g0372 965 MobiDBLite consensus disorder prediction 766 869 - -
Alju05g0372 965 ProSitePatterns Trp-Asp (WD) repeats signature. 441 455 IPR019775 -
Alju05g0372 965 PANTHER WD REPEAT DOMAIN 44 17 962 IPR040324 -
Alju05g0372 965 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 521 555 - -
Alju05g0372 965 Gene3D - 407 755 IPR015943 GO:0005515
Alju05g0372 965 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 561 IPR001680 GO:0005515
Alju05g0372 965 Pfam WD domain, G-beta repeat 519 552 IPR001680 GO:0005515
Alju05g0372 965 Pfam WD domain, G-beta repeat 557 594 IPR001680 GO:0005515
Alju05g0372 965 Pfam WD domain, G-beta repeat 707 728 IPR001680 GO:0005515
Alju05g0372 965 Pfam WD domain, G-beta repeat 420 453 IPR001680 GO:0005515
Alju05g0372 965 MobiDBLite consensus disorder prediction 884 924 - -
Alju05g0372 965 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 463 IPR001680 GO:0005515
Alju05g0372 965 SUPERFAMILY WD40 repeat-like 419 731 IPR036322 GO:0005515
Alju05g0372 965 ProSiteProfiles Trp-Asp (WD) repeats profile. 561 595 IPR001680 GO:0005515
Alju05g0372 965 MobiDBLite consensus disorder prediction 1 68 - -
Alju05g0372 965 MobiDBLite consensus disorder prediction 830 863 - -
Alju05g0372 965 MobiDBLite consensus disorder prediction 135 185 - -
Alju05g0372 965 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 561 595 - -
Alju05g0372 965 MobiDBLite consensus disorder prediction 886 924 - -
Alju05g0372 965 MobiDBLite consensus disorder prediction 464 496 - -
Alju05g0372 965 ProSitePatterns Trp-Asp (WD) repeats signature. 539 553 IPR019775 -
Alju05g0372 965 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 422 456 - -
Alju05g0372 965 ProSiteProfiles Trp-Asp (WD) repeats profile. 707 728 IPR001680 GO:0005515
Alju05g0372 965 SMART WD40_4 415 454 IPR001680 GO:0005515
Alju05g0372 965 SMART WD40_4 646 686 IPR001680 GO:0005515
Alju05g0372 965 SMART WD40_4 687 728 IPR001680 GO:0005515
Alju05g0372 965 SMART WD40_4 597 635 IPR001680 GO:0005515
Alju05g0372 965 SMART WD40_4 919 957 IPR001680 GO:0005515
Alju05g0372 965 SMART WD40_4 514 552 IPR001680 GO:0005515
Alju05g0372 965 SMART WD40_4 555 594 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0372 Alju-ChrAlju05 5863637 5867543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0372 520 728 Miscellaneous Gene Families AT5G08390 25.571 1.61e-13 73.2