Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01989 ATGGACCGCCGGAGGAAATCGCCAATAATGGATTTGGACGTTGAGGACGACGACGACCGATTCTTTGATCCGTCCGACCGCCTTTCCTGCGCTGTTCCTCTCGACTTCGTTTCCGCTTCCGAGGACGACGACGGCGATTTCGACGATGCAAGAATCTCCTTCTCCTCAGCGGTTTCCTCTGTTCCCGCCTTCAGAAACAGAGCATCAAGCATGCGAACTCCTCCGAGGCTTTCCGTTTCTACCAGCGACTCCTTCGCCGATTATGGAATATGGATGGGTTCTCCCGATTCAATTAGCGAGCGGCGGAAGCGGTTGCTTCTCGGAATGGGACTCGACGAAAACATGGAGTTCTTGAAGCTACAGAGCACGAAGCTTGGCCATGGAGTTTCCAGGAGGTTTGAGAAAGGCAACAATCAATATCGTGTGCCGATTTCACCGGAGAGGACGACATTGGATCACGGCGGCAGCGGCGGCGGCAAGGGTGGTGATAGAGGTATTAGAATCCGTACTACTACCGGTTCTTCTGGTTCCTCTGTTTTAGCAGAGCAAAAAACAGAGCAATCCTCTGTTTCCGTTGTTTTCGTTCGGTCACGGTCCGAAGGCGATATTGCATCGTTTTCAATGGAGAATAAAAGAAAAGAGGAGATGATTGGGAACGTCTCGAAGCAGCGCCTCACGAGGACTGCGACCGAGATACCTGTGCCACGCGGCAATGTTATTACTCATGCTAGGGCGGTGGTGAAAGATGCCAAGGAGGCAGAGGATCCGGAGGCGCACGACCAGAAAGTTTCTGCACCCGAGGTGAATTCGGATGTAGCTCCTTTCTTCTTGATCAAGAATTTGGACACGGGGAACGAATTTATCGTGAATGAATGTGGTGAAAATGGCGCGTGGAATAGGTTGAGTGACTTGCAGACAGGAAGGAAGCTAACCATGGAAGAGTTCGAGAAAACTGTGGGCCACTCAAGGGTGGTTAATAAGCTAATGAGGCGAGCGAAATTGGAAAACAATGAAGAATACTCGGGGGCTCTCGACTCGAGCCCTTCGATGTCTAGGAGCATGAGGATGAGCATAAGCATGAGCAAGAGCAAGAGCAGGAGAGGATCATTCTTAAGGAACATAAAAGGGGTAGCCAGCGGGATCATTCGCGAAAGAGAAAGAGATTGTCCTGCGCACCTTCACCAGGAAGTGGTTTGGGAAGCAAAACCAACCATGAGTAGATGGGTTCGGGTGAAGCAGAGTGGTAAGTCTTACAAGGAGTTTTCTGCTCTGCATTTGTGCCAAGAGTTTCAAGCTCATGAGGGACTAATTTGGAAAATTAAGTTTAATTTAGATGGGAGGTTTTTGGCGAGTGCTGGCGAGGACAAGGTGGTTCATGTTTGGGAAGTCATTGAGCGTGACTGTATGGGATTCTCTAATTCTAATTCGGTGTCTGAAGAAGGAAGCGTTATGATTGCGTCGGCGCCGCTGTCTAGTGAGAAGAAGAAGCGCTTGTTTGGAAGCAAGAGGGATAAAGTTCCGGAATACGTTCATATGTCCGAAACTGTTTTCACCCTTTTGGAGGAACCGTATTGCTCCTTTCACGGTCATTTGGATGAAGTTTTGGATTTGGCATGGTCTAAGTCTGAGCTTCTTCTGTCATCGTCAATGGATAAAACAGTGAGGTTATGGGACCTGGAAACTAAGAGTTGCTTGAAGGTGTTTCCTCATAATGACTACGTAACGTGCATACAGTTCAATCCTATAGACGAGGATTATTTCATAAGTGGCTGCCTCGACGGGAAGGTTAGAATATGGGACATACAGGAACGTCATGTCGTGGATTGGACTGATATCCATGAAATGGTTACCGCAATTGCATACACACCTGATGGTCAAGGTGTTTTAGTGGGCACAATGAAAGGGAGTTGTCGTACCTATAGTGTTGCAGATTGCAAATTAAGTCAAACAGGCACGGTGGAGATTCGACGCAAGAAGAAATCTCATCTCAGAAAAGTCACGGGTTTTCAGTTTGCCCCAGGAAATCCATCACAAGTACTTGTTACTTCAGCGGATGCCAGGGCAAGAATTGTTGAAGGTTCAGAGGTTGTTCAGAAGTTTAAGGGTTTTAAAAATGCAGACAGCCAAATCGCAGCTTCATTCAGTGCAAATGGAAAATTCATCATAAGTGCAAGTGATGATTCACAAGTGTTTATATGGAAGAACGAAGAGCAGAAAAGTGGAGGCACCGGAAAAGGTAGAAACATAGTGGTTACAAGGGCTCATGAGAACTTCCAATGCAAAGATGTTTTAATTGCAGTAGCATGGCCTTGCATGATCAGGGGTGATCCTCCACCAGTGAAATTGCAGACTTCGAAACGGATTTCGAAACGTTTTTCGGTGTCCTCGTCTAATAATGTAGTAGATGATACTACTAACGCTAGAAGATTCCTCCTTCCACCACTTCCCAAGAAGAAAAACAAGCAAGCAGCAGTAGATAGTGCTTCGAATTCTTCGGTCGAAGACCATGCCGCACTTTCGCATTCAGATTCTAGAAGAATGTTGCGGCATTTTTCAAAGAAGACTAATGGTCTTCACGTTACTCATGAAGAAGATGATAATCCTGAAGCCATCTCACGATCGAATTCAGGGATTAGCGATTCGTTTAGTTCGAGTTCAAGTTCGTCCTCAGCTATATATGGTTTTTCTTCAGCTTCATTTGGGTCATCATCTTTTTCTGAAGGTAGCCATGATTCCTCTGTAATTTATCCTTCGGCGTGGGGGTCGGTGATCGTGACAGCTGGAATTGGAGGCGAAATCCGTTGTTATCAGAATTTCGGGCTACCTCGCAAGATGAGCCGGATTTGA 2847 0.4672 MDRRRKSPIMDLDVEDDDDRFFDPSDRLSCAVPLDFVSASEDDDGDFDDARISFSSAVSSVPAFRNRASSMRTPPRLSVSTSDSFADYGIWMGSPDSISERRKRLLLGMGLDENMEFLKLQSTKLGHGVSRRFEKGNNQYRVPISPERTTLDHGGSGGGKGGDRGIRIRTTTGSSGSSVLAEQKTEQSSVSVVFVRSRSEGDIASFSMENKRKEEMIGNVSKQRLTRTATEIPVPRGNVITHARAVVKDAKEAEDPEAHDQKVSAPEVNSDVAPFFLIKNLDTGNEFIVNECGENGAWNRLSDLQTGRKLTMEEFEKTVGHSRVVNKLMRRAKLENNEEYSGALDSSPSMSRSMRMSISMSKSKSRRGSFLRNIKGVASGIIRERERDCPAHLHQEVVWEAKPTMSRWVRVKQSGKSYKEFSALHLCQEFQAHEGLIWKIKFNLDGRFLASAGEDKVVHVWEVIERDCMGFSNSNSVSEEGSVMIASAPLSSEKKKRLFGSKRDKVPEYVHMSETVFTLLEEPYCSFHGHLDEVLDLAWSKSELLLSSSMDKTVRLWDLETKSCLKVFPHNDYVTCIQFNPIDEDYFISGCLDGKVRIWDIQERHVVDWTDIHEMVTAIAYTPDGQGVLVGTMKGSCRTYSVADCKLSQTGTVEIRRKKKSHLRKVTGFQFAPGNPSQVLVTSADARARIVEGSEVVQKFKGFKNADSQIAASFSANGKFIISASDDSQVFIWKNEEQKSGGTGKGRNIVVTRAHENFQCKDVLIAVAWPCMIRGDPPPVKLQTSKRISKRFSVSSSNNVVDDTTNARRFLLPPLPKKKNKQAAVDSASNSSVEDHAALSHSDSRRMLRHFSKKTNGLHVTHEEDDNPEAISRSNSGISDSFSSSSSSSSAIYGFSSASFGSSSFSEGSHDSSVIYPSAWGSVIVTAGIGGEIRCYQNFGLPRKMSRI 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01989 948 Pfam WD domain, G-beta repeat 428 461 IPR001680 GO:0005515
Aip02g01989 948 Pfam WD domain, G-beta repeat 563 600 IPR001680 GO:0005515
Aip02g01989 948 Pfam WD domain, G-beta repeat 699 734 IPR001680 GO:0005515
Aip02g01989 948 Pfam WD domain, G-beta repeat 525 558 IPR001680 GO:0005515
Aip02g01989 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 527 567 IPR001680 GO:0005515
Aip02g01989 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 567 602 IPR001680 GO:0005515
Aip02g01989 948 PANTHER WD REPEAT DOMAIN 44 7 946 IPR040324 -
Aip02g01989 948 MobiDBLite consensus disorder prediction 838 870 - -
Aip02g01989 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 430 463 IPR001680 GO:0005515
Aip02g01989 948 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 946 - -
Aip02g01989 948 ProSitePatterns Trp-Asp (WD) repeats signature. 545 559 IPR019775 -
Aip02g01989 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 713 734 IPR001680 GO:0005515
Aip02g01989 948 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 567 602 - -
Aip02g01989 948 MobiDBLite consensus disorder prediction 144 183 - -
Aip02g01989 948 Gene3D - 414 768 IPR015943 GO:0005515
Aip02g01989 948 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 430 463 - -
Aip02g01989 948 SMART WD40_4 693 734 IPR001680 GO:0005515
Aip02g01989 948 SMART WD40_4 561 600 IPR001680 GO:0005515
Aip02g01989 948 SMART WD40_4 423 462 IPR001680 GO:0005515
Aip02g01989 948 SMART WD40_4 652 692 IPR001680 GO:0005515
Aip02g01989 948 SMART WD40_4 602 641 IPR001680 GO:0005515
Aip02g01989 948 SMART WD40_4 520 558 IPR001680 GO:0005515
Aip02g01989 948 MobiDBLite consensus disorder prediction 811 879 - -
Aip02g01989 948 SUPERFAMILY WD40 repeat-like 424 748 IPR036322 GO:0005515
Aip02g01989 948 MobiDBLite consensus disorder prediction 823 837 - -
Aip02g01989 948 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 527 561 - -
Aip02g01989 948 MobiDBLite consensus disorder prediction 168 183 - -
Aip02g01989 948 ProSitePatterns Trp-Asp (WD) repeats signature. 449 463 IPR019775 -
Aip02g01989 948 PRINTS G protein beta WD-40 repeat signature 449 463 IPR020472 -
Aip02g01989 948 PRINTS G protein beta WD-40 repeat signature 545 559 IPR020472 -
Aip02g01989 948 PRINTS G protein beta WD-40 repeat signature 587 601 IPR020472 -
Aip02g01989 948 Coils Coil 948 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01989 Aip-Chr2 86090429 86095323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01989 526 734 Miscellaneous Gene Families AT5G08390 23.502 9.52e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01989 K20241 - gmx:100779364 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g01989 02 86090429 86095323 Aip02g01989 02 86090429 86095323 ECH
Aip04g01785 04 75499208 75503629 Aip02g01989 02 86090429 86095323 PCT